Items where Author is "Swaminathan, Soumya"

Article

Chandrasekaran, Padmapriyadarsini and Szumowski, John D. and Akbar, Nabila and Shanmugasundaram, Prema and Jain, Anilkumar and Bathragiri, Marasamy and Pattnaik, Manoranjan and Turuk, Jyotirmayee and Karunaianantham, Ramesh and Balakrishnan, Senthilkumar and Pati, Sanghamitra and Hemanth Kumar, AK and Rathore, Manoj Kumar and Raja, Jegadeesh and Raghu Naidu, K and Horn, John and Whitworth, Laura and Sewell, Roger and Ramakrishnan, Lalita and Swaminathan, Soumya and Edelstein, Paul H (2024) A Dose-Finding Study to Guide Use of Verapamil as an Adjunctive Therapy in Tuberculosis. A Dose-Finding Study to Guide Use of Verapamil as an Adjunctive Therapy in Tuberculosis, 115 (2). pp. 324-332.

Padmapriyadarsini, Chandrasekaran and Vohra, Vikram and Bhatnagar, Anuj and Solanki, Rajesh and Sridhar, Rathinam and Anande, Lalitkumar and Muthuvijaylakshmi, M and Bhatia, Miraa and Jeyadeepa, Bharathi and Taneja, Gaurav and Balaji, S and Shah, Prashant and Saravanan, N and Chauhan, Vijay and Kumar, Hemanth and Ponnuraja, Chinnayin and Livchits, Viktoriya and Bahl, Monica and Alavadi, Umesh and Sachdeva, K S and Swaminathan, Soumya (2022) Bedaquiline, Delamanid, Linezolid and Clofazimine for Treatment of Pre-extensively Drug-Resistant Tuberculosis. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 76 (3). e938-46. ISSN 1537-6591

Karunaianantham, Ramesh and Nesa Kumar, Manohar and Gopalan, Bindu and Haribabu, Hemalatha and Hanna, Luke Elizabeth and Sanjeeva, G N and Reddy, Devarajulu and Shet, Anita and Swaminathan, Soumya and Padmapriyadarsini, Chandrasekaran (2022) Molecular Characterization of the Gene of Vertically Transmitted HIV-1 Strains in Children with Virological Failure. AIDS research and human retroviruses, 38 (6). pp. 491-496. ISSN 1931-8405

Shanmugam, Siva Kumar and Kumar, Narender and Sembulingam, Tamilzhalagan and Ramalingam, Suresh Babu and Selvaraj, Ashok and Rajendhiran, Udhayakumar and Solaiyappan, Sudha and Tripathy, Srikanth P. and Natrajan, Mohan and Chandrasekaran, Padmapriyadarsini and Swaminathan, Soumya and Parkhill, Julian and Peacock, Sharon J. and Ranganathan, Uma Devi K. and Kumar, Ayush (2022) Mycobacterium tuberculosis Lineages Associated with Mutations and Drug Resistance in Isolates from India. Microbiology Spectrum, 10 (3). ISSN 2165-0497

Paradkar, Mandar S and Devaleenal D, Bella and Mvalo, Tisungane and Arenivas, Ana and Thakur, Kiran T and Wolf, Lisa and Nimkar, Smita and Inamdar, Sadaf and Giridharan, Prathiksha and Selladurai, Elilarasi and Kinikar, Aarti and Valvi, Chhaya and Khwaja, Saltanat and Gadama, Daphne and Balaji, Sarath and Yadav Kattagoni, Krishna and Venkatesan, Mythily and Savic, Radojka and Swaminathan, Soumya and Gupta, Amita and Gupte, Nikhil and Mave, Vidya and Dooley, Kelly E and Agiwal, Shivali and Ahire, Rupali and Balasubramanian, Usha and Bendre, Manjushree and Chandane, Jyoti and Chopade, Kavita and Dalimbkar, Shamala and Deshpande, Prasad and Dhage, Rajendra and Ithape, Mahesh and Jadhav, Varsha and Kante, Sonali and Kapre, Pallavi and Khan, Nawshaba and Kulkarni, Vandana and Madewar, Renu and Meshram, Shashibhushan and Muttha, Kunal and Nadgeri, Vaishali and Nagargoje, Arti and Nagraj, Amita and Nijampurkar, Aparna and Onawale, Prerana and Pawar, Namrata and Pawar, Prashant and Pradhan, Neeta and Shaikh, Varsha and Shaikh, Zaheda and Shere, Dhananjay and Wani, Gouri and Kulkarni, Rajesh and Rajput, Uday and Ganesan, Mangalambal and Arasan, Gunasundari and Shankar, Shakila and Mary, S Stella and Karuppaiah, Sureshwari and Pauline, Leema and Karunakaran Pramila, Snegha and Arul, Priyadharshini and Ganesh, Sankar and Hanna, Luke Elizabeth and Ramesh, K and Kannan, M and Vijayakumar, Ruthra and Sivakumar, Surekha S and Devika, K and Radhakrishnan, A and Preethi, A R and Rajkumar, S and Saravanan, N and Ramachandran, Geetha and Hemanth Kumar, A K and Dharman, M and Sudha, V and Hissar, Syed and Nagarajan, Valarmathi and Jennifer, Linda and Supriya, R and Manimegalai, R and Kandan, Santhanam and Maniselvi, Archana and Puspha, Oli and Vaishnavi, S and Selvi, R and Neelakandan, Logeswari and Chiunda, Mary and Chunga, Moreen and Kamanga, Madalo and Kamthunzi, Portia and Kanthiti, Elizabeth and Mbewe, Abineli and Msiska, Emmie and Mumba, Noel and Zifa Phiri, Ian and Palichina, Victor and Sichali, Dorothy and Rexroad, Vivian and Hesseling, Anneke and Gupta, Y K and Phillips, Patrick (2022) Randomized Clinical Trial of High-Dose Rifampicin With or Without Levofloxacin Versus Standard of Care for Pediatric Tuberculous Meningitis: The TBM-KIDS Trial. Clinical Infectious Diseases, 75 (9). pp. 1594-1601. ISSN 1058-4838

Srinivasan, Ramalingam and Padmapriyadarsini, Chandrasekaran and Ramesh, Karunaianantham and Sanjeeva, G.N. and Reddy, Devarajulu and Suresh, Elumalai and Kumar, Ramesh and Sathyamoorthy, Pattabiraman and Swaminathan, Soumya and Shet, Anita (2021) APOC3 Gene Polymorphism and Antiretroviral Therapy-Induced Dyslipidemia in HIV-Infected Children. AIDS Research and Human Retroviruses, 37 (2). pp. 92-100. ISSN 0889-2229

Kumar, Nathella Pavan and Hissar, Syed and Thiruvengadam, Kannan and Banurekha, Velayuthum V. and Suresh, N. and Shankar, Janani and S, Elilarasi and N S, Gomathi and S, Kalpana and J, Ganesh and M A, Aravind and Baskaran, Dhanaraj and Tripathy, Srikanth and Swaminathan, Soumya and Babu, Subash (2021) Discovery and Validation of a Three-Cytokine Plasma Signature as a Biomarker for Diagnosis of Pediatric Tuberculosis. Frontiers in Immunology, 12. ISSN 1664-3224

Tibúrcio, Rafael and Barreto-Duarte, Beatriz and Naredren, Gopolan and Queiroz, Artur T. L. and Anbalagan, Selvaraj and Nayak, Kaustuv and Ravichandran, Narayanan and Subramani, Rajasekaran and Antonelli, Lis R. V. and Satagopan, Kumar and Anbalagan, Komathi and Porter, Brian O. and Sher, Alan and Swaminathan, Soumya and Sereti, Irini and Andrade, Bruno B. (2021) Dynamics of T-Lymphocyte Activation Related to Paradoxical Tuberculosis-Associated Immune Reconstitution Inflammatory Syndrome in Persons With Advanced HIV. Frontiers in Immunology, 12. ISSN 1664-3224

Safren, Steven A and Devaleenal, Bella and Biello, Katie B and Rawat, Shruta and Thomas, Beena E and Regenauer, Kristen S and Balu, Vinoth and Bedoya, C Andres and Dange, Alpana and Menon, Sunil and O’Cleirigh, Conall and Baruah, Dicky and Anand, Vivek and Hanna, Luke E and Karunaianantham, Ramesh and Thorat, Rakesh and Swaminathan, Soumya and Mimiaga, Matthew J and Mayer, Kenneth H (2021) Geographic and behavioral differences associated with sexually transmitted infection prevalence among Indian men who have sex with men in Chennai and Mumbai. International Journal of STD & AIDS, 32 (2). pp. 144-151. ISSN 0956-4624

Selvaraju, Sriram and Thiruvengadam, Kannan and Watson, Basilea and Thirumalai, Nataraj and Malaisamy, Muniyandi and Vedachalam, Chandrasekaran and Swaminathan, Soumya and Padmapriyadarsini, Chandrasekaran (2021) Long-term Survival of Treated Tuberculosis Patients in Comparison to a General Population In South India: A Matched Cohort Study. International Journal of Infectious Diseases, 110. pp. 385-393. ISSN 12019712

Kumar, Nathella Pavan and Hissar, Syed and Thiruvengadam, Kannan and Banurekha, Velayuthum V. and Balaji, Sarath and Elilarasi, S. and Gomathi, N. S. and Ganesh, J. and Aravind, M. A. and Baskaran, Dhanaraj and Tripathy, Srikanth and Swaminathan, Soumya and Babu, Subash (2021) Plasma chemokines as immune biomarkers for diagnosis of pediatric tuberculosis. BMC Infectious Diseases, 21 (1). ISSN 1471-2334

Subbian, Selvakumar and Gopalan, Narendran and Srinivasalu, Vignes Anand and Chinnayan, Ponnuraja and Velayutham, Banurekha and Bhaskar, Adhin and Santhanakrishnan, Ramesh and Senguttuvan, Thirumaran and Rathinam, Sridhar and Ayyamperumal, Mahilmaran and Satagopan, Kumar and Rajendran, Dhanalakshmi and Manoharan, Tamizhselvan and Lakshmanan, Sekar and Paramasivam, Paulkumaran and Angamuthu, Dhanalakshmi and Ganesan, Mangalambal and Easudoss Arockia, John Washington and Venkatesan, Ramesh Babu and Lakshmipathy, Venkatesan and Shanmugham, Shivakumar and Subramanyam, Balaji and Shankar, Shakila and Mohideen Shaheed, Jawahar and Dhanaraj, Baskaran and Paranji Ramiyengar, Narayanan and Swaminathan, Soumya and Chandrasekaran, Padmapriyadarsini (2021) Predictors of unfavorable responses to therapy in rifampicin-sensitive pulmonary tuberculosis using an integrated approach of radiological presentation and sputum mycobacterial burden. PLOS ONE, 16 (9). e0257647. ISSN 1932-6203

Tamilzhalagan, Sembulingam and Shanmugam, Sivakumar and Selvaraj, Ashok and Suba, Sakthi and Suganthi, Chittibabu and Moonan, Patrick K. and Surie, Diya and Sathyanarayanan, Mukesh Kumar and Gomathi, Narayanan Shivaram and Jayabal, Lavanya and Sachdeva, Kuldeep Singh and Selvaraju, Sriram and Swaminathan, Soumya and Tripathy, Srikanth Prasad and Hall, Patricia J. and Ranganathan, Uma Devi (2021) Whole-Genome Sequencing to Identify Missed Rifampicin and Isoniazid Resistance Among Tuberculosis Isolates—Chennai, India, 2013–2016. Frontiers in Microbiology, 12. ISSN 1664-302X

Velayutham, Banurekha and Jawahar, Mohideen Shaheed and Nair, Dina and Navaneethapandian, Pooranagangadevi and Ponnuraja, Chinnaiyan and Chandrasekaran, Kandasamy and Narayan Sivaramakrishnan, Gomathi and Makesh Kumar, Marimuthu and Paul Kumaran, Paramasivam and Ramesh Kumar, Santhanakrishnan and Baskaran, Dhanaraj and Bella Devaleenal, Daniel and Sirasanambati, Devarajulu Reddy and Vasantha, Mahalingam and Palaniyandi, Paramasivam and Ramachandran, Geetha and Uma Devi, Kadayam Ranganathan and Elizabeth Hannah, Luke and Sekar, Gomathi and Radhakrishnan, Ammayappan and Kalaiselvi, Dharuman and Dhanalakshmi, Angamuthu and Thiruvalluvan, Elangovan and Raja Sakthivel, Murugesan and Mahilmaran, Ayyamperumal and Sridhar, Rathinam and Jayabal, Lavanya and Rathinam, Prabhakaran and Angamuthu, Prabhakar and Soorappa Ponnusamy, Kumaresan and Venkatesan, Perumal and Natrajan, Mohan and Prasad Tripathy, Srikanth and Swaminathan, Soumya (2020) 4‐month moxifloxacin containing regimens in the treatment of patients with sputum‐positive pulmonary tuberculosis in South India – a randomised clinical trial. Tropical Medicine & International Health, 25 (4). pp. 483-495. ISSN 1360-2276

Narendran, Gopalan and Jyotheeswaran, Keerthana and Senguttuvan, Thirumaran and Vinhaes, Caian L. and Santhanakrishnan, Ramesh K. and Manoharan, Tamizhselvan and Selvaraj, Anbhalagan and Chandrasekaran, Padmapriyadarsini and Menon, Pradeep A. and Bhavani, Kannabiran P. and Reddy, Devarajulu and Narayanan, Ravichandran and Subramanyam, Balaji and Sathyavelu, Sekhar and Krishnaraja, Raja and Kalirajan, Pownraj and Angamuthu, Dhanalakshmi and Susaimuthu, Stella Mary and Ganesan, Ranjit R.K. and Tripathy, Srikanth P. and Swaminathan, Soumya and Andrade, Bruno B. (2020) Characteristics of paradoxical tuberculosis-associated immune reconstitution inflammatory syndrome and its influence on tuberculosis treatment outcomes in persons living with HIV. International Journal of Infectious Diseases, 98. pp. 261-267. ISSN 12019712

Salhotra, V.S. and Sachdeva, K.S. and Kshirsagar, Neelima and Parmar, Malik and Ramachandran, Ranjani and Padmapriyadarsini, C. and Patel, Yogesh and Mehandru, Lalit and Jaju, Jyoti and Ponnuraja, C. and Gupta, Madhur and Kalaiselvan, V. and Shamim, Almas and Khaparde, S. and Swaminathan, Soumya (2020) Effectiveness and safety of bedaquiline under conditional access program for treatment of drug-resistant tuberculosis in India: An interim analysis. Indian Journal of Tuberculosis, 67 (1). pp. 29-37. ISSN 00195707

Padmapriyadarsini, C and Sekar, L and Reddy, Devarajulu and Chitra, Anandha and Poornagangadevi, N and Selvaraj, M and Bhavani, PK and Mothi, SN and Nandagopal, K and Vennila, S and Tamizhselvan, M and Maheshmanisha, J and Agarwal, Upasna and Rewari, BB and Swaminathan, Soumya (2020) Effectiveness of isoniazid preventive therapy on incidence of tuberculosis among HIV-infected adults in programme setting. Indian Journal of Medical Research, 152 (6). p. 648. ISSN 0971-5916

Ansari, Aftab A. and Munusamy Ponnan, Sivasankaran and Hayes, Peter and Fernandez, Natalia and Thiruvengadam, Kannan and Pattabiram, Sathyamurthi and Nesakumar, Manohar and Srinivasan, Ashokkumar and Kathirvel, Sujitha and Shankar, Janani and Goyal, Rajat and Singla, Nikhil and Mukherjee, Joyeeta and Chatrath, Shweta and Gilmour, Jill and Subramanyam, Sudha and Prasad Tripathy, Srikanth and Swaminathan, Soumya and Hanna, Luke Elizabeth (2020) Evaluation of antiviral T cell responses and TSCM cells in volunteers enrolled in a phase I HIV-1 subtype C prophylactic vaccine trial in India. PLOS ONE, 15 (2). e0229461. ISSN 1932-6203

Castor, Kamaiaji and Mota, Fabio Batista and da Silva, Roseli Monteiro and Cabral, Bernardo Pereira and Maciel, Ethel Leonor and de Almeida, Isabela Neves and Arakaki-Sanchez, Denise and Andrade, Kleydson Bonfim and Testov, Vadim and Vasilyeva, Irina and Zhao, Yanlin and Zhang, Hui and Singh, Manjula and Rao, Raghuram and Tripathy, Srikanth and Gray, Glenda and Padayatchi, Nesri and Bhagwandin, Niresh and Swaminathan, Soumya and Kasaeva, Tereza and Kritski, Afrânio (2020) Mapping the tuberculosis scientific landscape among BRICS countries: a bibliometric and network analysis. Memórias do Instituto Oswaldo Cruz, 115. ISSN 0074-0276

Tripathy, Srikanth and Gomathi, NS and Singh, Manjula and Singh, UrvashiB and Myneedu, VP and Chauhan, DS and Sarin, Rohit and Mohan, Anant and Bhatnagar, Anuj and Khangembam, JitenSingh and Kannan, T and Rao, MV.V and Logani, Jyoti and Dey, Bindu and Gangakhedkar, RamanR and Swaminathan, Soumya (2020) Multicentric validation of indigenous molecular test Truenat™ MTB for detection of Mycobacterium tuberculosis in sputum samples from presumptive pulmonary tuberculosis patients in comparison with reference standards. Indian Journal of Medical Research, 152 (4). p. 378. ISSN 0971-5916

Dandona, Rakhi and Kumar, G Anil and Henry, Nathaniel J and Joshua, Vasna and Ramji, Siddarth and Gupta, Subodh S and Agrawal, Deepti and Kumar, Rashmi and Lodha, Rakesh and Mathai, Matthews and Kassebaum, Nicholas J and Pandey, Anamika and Wang, Haidong and Sinha, Anju and Hemalatha, Rajkumar and Abdulkader, Rizwan S and Agarwal, Vivek and Albert, Sandra and Biswas, Atanu and Burstein, Roy and Chakma, Joy K and Christopher, D J and Collison, Michael and Dash, A P and Dey, Sagnik and Dicker, Daniel and Gardner, William and Glenn, Scott D and Golechha, Mahaveer J and He, Yihua and Jerath, Suparna G and Kant, Rajni and Kar, Anita and Khera, Ajay K and Kinra, Sanjay and Koul, Parvaiz A and Krish, Varsha and Krishnankutty, Rinu P and Kurpad, Anura V and Kyu, Hmwe H and Laxmaiah, Avula and Mahanta, Jagadish and Mahesh, P A and Malhotra, Ridhima and Mamidi, Raja S and Manguerra, Helena and Mathew, Joseph L and Mathur, Manu R and Mehrotra, Ravi and Mukhopadhyay, Satinath and Murthy, G V S and Mutreja, Parul and Nagalla, Balakrishna and Nguyen, Grant and Oommen, Anu M and Pati, Ashalata and Pati, Sanghamitra and Perkins, Samantha and Prakash, Sanjay and Purwar, Manorama and Sagar, Rajesh and Sankar, Mari J and Saraf, Deepika S and Shukla, D K and Shukla, Sharvari R and Singh, Narinder P and Sreenivas, V and Tandale, Babasaheb and Thankappan, Kavumpurathu R and Tripathi, Manjari and Tripathi, Suryakant and Tripathy, Srikanth and Troeger, Christopher and Varghese, Chris M and Varughese, Santosh and Watson, Stefanie and Yadav, Geetika and Zodpey, Sanjay and Reddy, K Srinath and Toteja, G S and Naghavi, Mohsen and Lim, Stephen S and Vos, Theo and Bekedam, Hendrik J and Swaminathan, Soumya and Murray, Christopher J L and Hay, Simon I and Sharma, R S and Dandona, Lalit (2020) Subnational mapping of under-5 and neonatal mortality trends in India: the Global Burden of Disease Study 2000–17. The Lancet, 395 (10237). pp. 1640-1658. ISSN 01406736

Thomas, Beena E and Suresh, Chandra and Lavanya, J and Lindsley, Mika M and Galivanche, Amith T and Sellappan, Senthil and Ovung, Senthanro and Aravind, Amritha and Lincy, Savari and Raja, Agnes Lawrence and Kokila, S and Javeed, B and Arumugam, S and Mayer, Kenneth H and Swaminathan, Soumya and Subbaraman, Ramnath (2020) Understanding pretreatment loss to follow-up of tuberculosis patients: an explanatory qualitative study in Chennai, India. BMJ Global Health, 5 (2). e001974. ISSN 2059-7908

Ehtesham, Hasnain Seyed and Kalra, Aakshi and Parija, Debadutta and Raizada, Neeraj and Sachdeva, K. S. and Rao, Raghuram and Swaminathan, Soumya and Khanna, Ashwani and Chopra, Kamal Kishore and Hanif, M. and Singh, Varinder and Umadevi, K. R. and Sheladia, K. N. and Rao, Rama and Vasundhara, N. and S., Anil and A. R., Nirmala and Azeem, Abdul and Chhajlani, Vijay and Khurana, Jyoti and Das, N. J. and Choudhury, Bandana and Nair, Sreenivas Achuthan and Mall, Shalini and Sen, Rajashree and Chadha, Sarabjit Singh and Denkinger, Claudia M. and Boehme, Catharina and Sarin, Sanjay (2020) Upfront Xpert MTB/RIF for diagnosis of pediatric TB—Does it work? Experience from India. PLOS ONE, 15 (8). e0236057. ISSN 1932-6203

Singh, UrvashiB and Gomathi, NS and Singh, Manjula and Myneedu, VP and Chauhan, DS and Tripathy, Srikanth and Sarin, Rohit and Mohan, Anant and Bhatnagar, Anuj and Khangembam, JitenSingh and Kannan, T and V. Rao, MV and Logani, Jyoti and Dey, Bindu and Gangakhedkar, RR and Swaminathan, Soumya (2020) Validation of an indigenous assay for rapid molecular detection of rifampicin resistance in presumptive multidrug-resistant pulmonary tuberculosis patients. Indian Journal of Medical Research, 152 (5). p. 482. ISSN 0971-5916

Refaya, Ahmed Kabir and Bhargavi, Gunapati and Mathew, Noelin Chinnu and Rajendran, Ananthi and Krishnamoorthy, Radhika and Swaminathan, Soumya and Palaniyandi, Kannan (2020) A review on bovine tuberculosis in India. Tuberculosis, 122. p. 101923. ISSN 14729792

Swaminathan, Soumya and Tripathy, Srikanth Prasad and Tholkappian, Ayyakannu Sivaprakasham and Saravanan, Balakrishnan and Dolla, Chandra Kumar and Rajendran, Krishnan and Kannan, Thiruvengadam and Karikalan, Nagarajan and Thomas, Beena Elizabeth and Muniyandi, Malaisamy (2019) Catastrophic costs due to tuberculosis in South India: comparison between active and passive case finding. Transactions of The Royal Society of Tropical Medicine and Hygiene, 114 (3). pp. 185-192. ISSN 0035-9203

Subbaraman, Ramnath and Thomas, Beena E. and Sellappan, Senthil and Suresh, Chandra and Jayabal, Lavanya and Lincy, Savari and Raja, Agnes L. and McFall, Allison and Solomon, Sunil Suhas and Mayer, Kenneth H. and Swaminathan, Soumya (2019) Correction: Tuberculosis patients in an Indian mega-city: Where do they live and where are they diagnosed? PLOS ONE, 14 (10). e0224808. ISSN 1932-6203

Silveira-Mattos, Paulo S. and Narendran, Gopalan and Akrami, Kevan and Fukutani, Kiyoshi F. and Anbalagan, Selvaraj and Nayak, Kaustuv and Subramanyam, Sudha and Subramani, Rajasekaran and Vinhaes, Caian L. and Souza, Deivide Oliveira-de and Antonelli, Lis R. and Satagopan, Kumar and Porter, Brian O. and Sher, Alan and Swaminathan, Soumya and Sereti, Irini and Andrade, Bruno B. (2019) Differential expression of CXCR3 and CCR6 on CD4+ T-lymphocytes with distinct memory phenotypes characterizes tuberculosis-associated immune reconstitution inflammatory syndrome. Scientific Reports, 9 (1). ISSN 2045-2322

Padmapriyadarsini, Chandrasekaran and Bhavani, Perumal K and Natrajan, Mohan and Ponnuraja, Chinnayan and Kumar, Hemanth and Gomathy, Sivaramakrishnan N and Guleria, Randeep and Jawahar, Shaheed M and Singh, Manjula and Balganesh, Tanjore and Swaminathan, Soumya (2019) Evaluation of metformin in combination with rifampicin containing antituberculosis therapy in patients with new, smear-positive pulmonary tuberculosis (METRIF): study protocol for a randomised clinical trial. BMJ Open, 9 (3). e024363. ISSN 2044-6055

Ramaiah, Arunachalam and Nayak, Soumya and Rakshit, Srabanti and Manson, Abigail L. and Abeel, Thomas and Shanmugam, Sivakumar and Sahoo, Pravat Nalini and John, Anto Jesuraj Uday Kumar and Sundaramurthi, Jagadish Chandrabose and Narayanan, Sujatha and D'Souza, George and von Hoegen, Paul and Ottenhoff, Tom H. M. and Swaminathan, Soumya and Earl, Ashlee M. and Vyakarnam, Annapurna (2019) Evidence for Highly Variable, Region-Specific Patterns of T-Cell Epitope Mutations Accumulating in Mycobacterium tuberculosis Strains. Frontiers in Immunology, 10. ISSN 1664-3224

Shanmugam, Sivakumar and Kumar, Narender and Nair, Dina and Natrajan, Mohan and Tripathy, Srikanth Prasad and Peacock, Sharon J. and Swaminathan, Soumya and Ranganathan, Uma Devi and Cameron Thrash, J. (2019) Genome Sequencing of Polydrug-, Multidrug-, and Extensively Drug-Resistant Mycobacterium tuberculosis Strains from South India. Microbiology Resource Announcements, 8 (12). ISSN 2576-098X

Chandramohan, Yuvaraj and Padmanaban, Venkatesan and Bethunaickan, Ramalingam and Tripathy, Srikanth and Swaminathan, Soumya and Ranganathan, Uma Devi (2019) In vitro interaction profiles of the new antitubercular drugs bedaquiline and delamanid with moxifloxacin against clinical Mycobacterium tuberculosis isolates. Journal of Global Antimicrobial Resistance, 19. pp. 348-353. ISSN 22137165

Diemert, David Joseph and Munusamy Ponnan, Sivasankaran and Pattabiram, Sathyamurthy and Thiruvengadam, Kannan and Goyal, Rajat and Singla, Nikhil and Mukherjee, Joyeeta and Chatrath, Shweta and Bergin, Philip and T. Kopycinski, Jakub and Gilmour, Jill and Kumar, Sriram and Muthu, Malathy and Subramaniam, Sudha and Swaminathan, Soumya and Prasad Tripathy, Srikanth and Luke, Hanna Elizabeth (2019) Induction and maintenance of bi-functional (IFN-γ + IL-2+ and IL-2+ TNF-α+) T cell responses by DNA prime MVA boosted subtype C prophylactic vaccine tested in a Phase I trial in India. PLOS ONE, 14 (3). e0213911. ISSN 1932-6203

Neyrolles, Olivier and Mave, Vidya and Chandrasekaran, Padmapriyadarshini and Chavan, Amol and Shivakumar, Shri Vijay Bala Yogendra and Danasekaran, Kavitha and Paradkar, Mandar and Thiruvengadam, Kannan and Kinikar, Aarti and Murali, Lakshmi and Gaikwad, Sanjay and Hanna, Luke Elizabeth and Kulkarni, Vandana and Pattabiraman, Sathyamoorthy and Suryavanshi, Nishi and Thomas, Beena and Kohli, Rewa and Sivaramakrishnan, Gomathi Narayan and Pradhan, Neeta and Bhanu, Brindha and Kagal, Anju and Golub, Jonathan and Gandhi, Neel and Gupte, Akshay and Gupte, Nikhil and Swaminathan, Soumya and Gupta, Amita (2019) Infection free “resisters” among household contacts of adult pulmonary tuberculosis. PLOS ONE, 14 (7). e0218034. ISSN 1932-6203

Palaniyandi, Kannan and Kumar, Narender and Veerasamy, Maroudam and Kabir Refaya, Ahmed and Dolla, Chandrakumar and Balaji, Subramanyam and Baskaran, Dhanaraj and Thiruvengadam, Kannan and Rajendran, Ananthi and Narayanan, Sujatha and Raj, Dhinakar and Swaminathan, Soumya and Peacock, Sharon J. (2019) Isolation and comparative genomics of Mycobacterium tuberculosis isolates from cattle and their attendants in South India. Scientific Reports, 9 (1). ISSN 2045-2322

Cheedarla, Narayanaiah and Sundaramurthi, Jagadish Chandrabose and Hemalatha, Babu and Anangi, Brahmaiah and Nesakumar, Manohar and Ashokkumar, Manickam and Vidya Vijayan, K.K. and Tripathy, Srikanth Prasad and Swaminathan, Soumya and Vaniambadi, S. Kalyanaraman and Ramanathan, D. Vadakkupattu and Hanna, Luke Elizabeth (2019) Mapping of Neutralizing Antibody Epitopes on the Envelope of Viruses Obtained from Plasma Samples Exhibiting Broad Cross-Clade Neutralization Potential Against HIV-1. AIDS Research and Human Retroviruses, 35 (2). pp. 169-184. ISSN 0889-2229

Narendran, Gopalan and Oliveira-de-Souza, Deivide and Vinhaes, Caian L. and Akrami, Kevan and Fukutani, Kiyoshi F. and Banu, Kesavamurthy and Chandrasekaran, Padmapriyadarsini and Ravichandran, Narayanan and Sereti, Irini and Swaminathan, Soumya and Andrade, Bruno B. (2019) Multifocal tuberculosis-associated immune reconstitution inflammatory syndrome – a case report of a complicated scenario. BMC Infectious Diseases, 19 (1). ISSN 1471-2334

Ramachandran, Geetha and Chandrasekaran, Padmapriyadarshini and Gaikwad, Sanjay and Agibothu Kupparam, Hemanth Kumar and Thiruvengadam, Kannan and Gupte, Nikhil and Paradkar, Mandar and Dhanasekaran, Kavitha and Sivaramakrishnan, Gomathi Narayan and Kagal, Anju and Thomas, Beena and Pradhan, Neeta and Kadam, Dileep and Hanna, Luke Elizabeth and Balasubramanian, Usha and Kulkarni, Vandana and Murali, Lakshmi and Golub, Jonathan and Gupte, Akshay and Shivakumar, Shri Vijay Bala Yogendra and Swaminathan, Soumya and Dooley, Kelly E and Gupta, Amita and Mave, Vidya (2019) Subtherapeutic Rifampicin Concentration Is Associated With Unfavorable Tuberculosis Treatment Outcomes. Clinical Infectious Diseases, 70 (7). pp. 1463-1470. ISSN 1058-4838

Refaya, Ahmed Kabir and Kumar, Narender and Raj, Dhinakar and Veerasamy, Maroudam and Balaji, Subramanyam and Shanmugam, Sivakumar and Rajendran, Ananthi and Tripathy, Srikanth Prasad and Swaminathan, Soumya and Peacock, Sharon J. and Palaniyandi, Kannan and Gill, Steven R. (2019) Whole-Genome Sequencing of a Mycobacterium orygis Strain Isolated from Cattle in Chennai, India. Microbiology Resource Announcements, 8 (40). ISSN 2576-098X

Hasnain, Seyed Ehtesham and Raizada, Neeraj and Khaparde, Sunil D. and Salhotra, Virender Singh and Rao, Raghuram and Kalra, Aakshi and Swaminathan, Soumya and Khanna, Ashwani and Chopra, Kamal Kishore and Hanif, M. and Singh, Varinder and Umadevi, K. R. and Nair, Sreenivas Achuthan and Huddart, Sophie and Prakash, C. H. Surya and Mall, Shalini and Singh, Pooja and Saha, B. K. and Denkinger, Claudia M. and Boehme, Catharina and Sarin, Sanjay (2018) Accelerating access to quality TB care for pediatric TB cases through better diagnostic strategy in four major cities of India. PLOS ONE, 13 (2). e0193194. ISSN 1932-6203

Hasnain, Seyed Ehtesham and Raizada, Neeraj and Khaparde, Sunil D. and Swaminathan, Soumya and Sarin, Sanjay and Salhotra, Virender Singh and Kalra, Aakshi and Khanna, Ashwani and Chopra, K. K. and Hanif, M. and Umadevi, K. R. and Hissar, Syed and Nair, Sreenivas Achuthan and Prakash, C. H. Surya and Saha, B. K. and Rao, Raghuram and Denkinger, Claudia and Boehme, Catharina (2018) Catalysing progressive uptake of newer diagnostics by health care providers through outreach and education in four major cities of India. PLOS ONE, 13 (3). e0193341. ISSN 1932-6203

Vidyavijayan, K. K. and Cheedarala, Narayanaiah and Babu, Hemalatha and Precilla, Lucia K. and Sathyamurthi, Pattabiraman and Chandrasekaran, Padmapriyadarsini and Murugavel, Kailapuri G. and Swaminathan, Soumya and Tripathy, Srikanth P. and Hanna, Luke Elizabeth (2018) Cross Type Neutralizing Antibodies Detected in a Unique HIV-2 Infected Individual From India. Frontiers in Immunology, 9. ISSN 1664-3224

Gopalan, Narendran and Santhanakrishnan, Ramesh Kumar and Palaniappan, Alangudi Natarajan and Menon, Pradeep Aravindan and Lakshman, Sekar and Chandrasekaran, Padmapriyadarsini and Sivaramakrishnan, Gomathi Narayan and Reddy, Devarajulu and Kannabiran, Bhavani Perumal and Agiboth, Hemanth Kumar Kupparam and Krishnamoorthy, Vijay and Rathinam, Sridhar and Chockalingam, Chandrasekar and Manoharan, Tamizhselvan and Ayyamperumal, MahilMaran and Jayanthi, Nalini and Satagopan, Kumar and Narayanan, Ravichandran and Krishnaraja, Raja and Sathiyavelu, Sekar and Kesavamurthy, Bhanu and Suresh, Chandra and Selvachitiram, Murugesan and Arasan, Gunasundari and Susaimuthu, Stella and Rathinam, Prabhakaran and Angamuthu, Prabhakar and Jayabal, Lavanya and Murali, Lakshmi and Ramachandran, Ranjani and Tripathy, Srikanth Prasad and Swaminathan, Soumya (2018) Daily vs Intermittent Antituberculosis Therapy for Pulmonary Tuberculosis in Patients With HIV. JAMA Internal Medicine, 178 (4). p. 485. ISSN 2168-6106

Nair, Dina and Velayutham, Banurekha and Marimuthu, Makeshkumar and Navaneethapandian, PooranaGanga Devi and Chinnaiyan, Ponnuraja and Jawahar, MohammedShaheed and Swaminathan, Soumya (2018) Effect of moxifloxacin on QTc interval in adults with pulmonary tuberculosis. The National Medical Journal of India, 31 (1). p. 58. ISSN 0970-258X

Cheedarla, Narayanaiah and Hemalatha, Babu and Anangi, Brahmaiah and Muthuramalingam, Kannan and Selvachithiram, Murugesan and Sathyamurthi, Pattabiraman and Kailasam, Nandagopal and Varadarajan, Raghavan and Swaminathan, Soumya and Tripathy, Srikanth Prasad and Vaniambadi, S. Kalyanaraman and Vadakkupattu, D. Ramanathan and Hanna, Luke Elizabeth (2018) Evolution of Neutralization Response in HIV-1 Subtype C-Infected Individuals Exhibiting Broad Cross-Clade Neutralization of HIV-1 Strains. Frontiers in Immunology, 9. ISSN 1664-3224

Harishankar, Murugesan and Ravikrishnan, Harini and Ravishankar, Akshaya and Hanna, Luke Elizabeth and Swaminathan, Soumya and Selvaraj, Paramasivam and Bethunaickan, Ramalingam (2018) IL-10 Promoter -592 Polymorphism may Influence Susceptibility to HIV Infection in South Indian Population. Current HIV Research, 16 (1). pp. 58-63. ISSN 1570162X

Diemert, David Joseph and Munusamy Ponnan, Sivasankaran and Swaminathan, Soumya and Tiruvengadam, Kannan and K. K., Vidyavijayan and Cheedarla, Narayana and Nesakumar, Manohar and Kathirvel, Sujitha and Goyal, Rajat and Singla, Nikhil and Mukherjee, Joyeeta and Bergin, Philip and T. Kopycinski, Jakub and Gilmour, Jill and Prasad Tripathy, Srikanth and Luke, Hanna Elizabeth (2018) Induction of circulating T follicular helper cells and regulatory T cells correlating with HIV-1 gp120 variable loop antibodies by a subtype C prophylactic vaccine tested in a Phase I trial in India. PLOS ONE, 13 (8). e0203037. ISSN 1932-6203

Ramachandran, Geetha and Kumar, A.K. Hemanth and Chandrasekaran, V and Kannan, T and Lavanya, J and Swaminathan, Soumya (2018) Intrapatient variability in plasma rifampicin & isoniazid in tuberculosis patients. Indian Journal of Medical Research, 147 (3). p. 287. ISSN 0971-5916

Chandrasekaran, Padmapriyadarsini and Shet, Anita and Srinivasan, Ramalingam and Sanjeeva, G. N. and Subramanyan, Sudha and Sunderesan, Suba and Ramesh, Karunaianantham and Gopalan, Bindu and Suresh, Elumalai and Poornagangadevi, Navaneethan and Hanna, Luke E. and Chandrasekar, Chockalingam and Wanke, Christine and Swaminathan, Soumya (2018) Long-term virological outcome in children receiving first-line antiretroviral therapy. AIDS Research and Therapy, 15 (1). ISSN 1742-6405

Dayal, Rajeshwar and Singh, Yatish and Agarwal, Dipti and Kumar, Manoj and Swaminathan, Soumya and Ramachandran, Geetha and Kumar, Santosh and Narayan, Shamrendra and Goyal, Ankur and Kumar, A K Hemant (2018) Pharmacokinetic study of isoniazid and pyrazinamide in children: impact of age and nutritional status. Archives of Disease in Childhood, 103 (12). pp. 1150-1154. ISSN 0003-9888

Thomas, Beena E. and Subbaraman, Ramnath and Sellappan, Senthil and Suresh, Chandra and Lavanya, J. and Lincy, Savari and Raja, Agnes Lawrence and Javeed, B. and Kokila, S. and Arumugam, S. and Swaminathan, Soumya and Mayer, Kenneth H. (2018) Pretreatment loss to follow-up of tuberculosis patients in Chennai, India: a cohort study with implications for health systems strengthening. BMC Infectious Diseases, 18 (1). ISSN 1471-2334

Guiastrennec, Benjamin and Ramachandran, Geetha and Karlsson, Mats O. and Kumar, A.K. Hemanth and Bhavani, Perumal Kannabiran and Gangadevi, N. Poorana and Swaminathan, Soumya and Gupta, Amita and Dooley, Kelly E. and Savic, Radojka M. (2018) Suboptimal Antituberculosis Drug Concentrations and Outcomes in Small and HIV-Coinfected Children in India: Recommendations for Dose Modifications. Clinical Pharmacology & Therapeutics, 104 (4). pp. 733-741. ISSN 00099236

Gao, Lei and Chandrasekaran, Padmapriyadarsini and Mave, Vidya and Thiruvengadam, Kannan and Gupte, Nikhil and Shivakumar, Shri Vijay Bala Yogendra and Hanna, Luke Elizabeth and Kulkarni, Vandana and Kadam, Dileep and Dhanasekaran, Kavitha and Paradkar, Mandar and Thomas, Beena and Kohli, Rewa and Dolla, Chandrakumar and Bharadwaj, Renu and Sivaramakrishnan, Gomathi Narayan and Pradhan, Neeta and Gupte, Akshay and Murali, Lakshmi and Valvi, Chhaya and Swaminathan, Soumya and Gupta, Amita (2018) Tuberculin skin test and QuantiFERON-Gold In Tube assay for diagnosis of latent TB infection among household contacts of pulmonary TB patients in high TB burden setting. PLOS ONE, 13 (8). e0199360. ISSN 1932-6203

Dolla, Chandrakumar and Padmapriyadarsini, C and Pradeep Menon, A and Muniyandi, M and Adinarayanan, Srividya and Sekar, Gomathi and Kavitha, D and Tripathy, Srikanth Prasad and Swaminathan, Soumya (2018) Tuberculosis among the homeless in Chennai city, South India. Transactions of The Royal Society of Tropical Medicine and Hygiene, 111 (10). pp. 479-481. ISSN 0035-9203

Yotebieng, Marcel and Raizada, Neeraj and Khaparde, Sunil D. and Rao, Raghuram and Kalra, Aakshi and Sarin, Sanjay and Salhotra, Virender Singh and Swaminathan, Soumya and Khanna, Ashwani and Chopra, Kamal Kishore and Hanif, M. and Singh, Varinder and Umadevi, K. R. and Nair, Sreenivas Achuthan and Huddart, Sophie and Tripathi, Rajneesh and Surya Prakash, C. H. and Saha, B. K. and Denkinger, Claudia M. and Boehme, Catharina (2018) Upfront Xpert MTB/RIF testing on various specimen types for presumptive infant TB cases for early and appropriate treatment initiation. PLOS ONE, 13 (8). e0202085. ISSN 1932-6203

Mimiaga, Matthew J. and Thomas, Beena and Mayer, Kenneth H. and Regenauer, Kristen S. and Dange, Alpana and Andres Bedoya, C. and Rawat, Shruta and Balu, Vinoth and O’Cleirigh, Conall and Biello, Katie B. and Anand, Vivek and Swaminathan, Soumya and Safren, Steven A. (2018) A randomized clinical efficacy trial of a psychosocial intervention to strengthen self-acceptance and reduce HIV risk for MSM in India: study protocol. BMC Public Health, 18 (1). ISSN 1471-2458

Padmapriyadarsini, C and Ramesh, K and Sekar, L and Ramachandran, Geetha and Reddy, Devaraj and Narendran, G and Sekar, S and Chandrasekar, C and Anbarasu, D and Wanke, Christine and Swaminathan, Soumya (2017) Factors affecting high-density lipoprotein cholesterol in HIV-infected patients on nevirapine-based antiretroviral therapy. The Indian journal of medical research, 145 (5). pp. 641-650. ISSN 0971-5916

Kumar, Agibothu Kupparam Hemanth and Chandrasekaran, Vedachalam and Kumar, Angadi Kiran and Kawaskar, M and Lavanya, J and Swaminathan, Soumya and Ramachandran, Geetha (2017) Food significantly reduces plasma concentrations of first-line anti-tuberculosis drugs. The Indian journal of medical research, 145 (4). pp. 530-535. ISSN 0971-5916

Kumar, A K Hemanth and Chandrasekaran, V and Kannan, T and Murali, A Lakshmi and Lavanya, J and Sudha, V and Swaminathan, Soumya and Ramachandran, Geetha (2017) Anti-tuberculosis drug concentrations in tuberculosis patients with and without diabetes mellitus. European Journal of Clinical Pharmacology, 73 (1). pp. 65-70. ISSN 0031-6970

Vidyavijayan, K.K. and Hassan, Sameer and Precilla, Lucia K. and Ashokkumar, Manickam and Chandrasekeran, Padmapriyadharshini and Swaminathan, Soumya and Hanna, Luke Elizabeth (2017) Biased Nucleotide Composition and Differential Codon Usage Pattern in HIV-1 and HIV-2. AIDS Research and Human Retroviruses, 33 (3). pp. 298-307. ISSN 0889-2229

Cheedarla, Narayanaiah and Precilla, K. Lucia and Babu, Hemalatha and Vijayan, K. K. Vidya and Ashokkumar, Manickam and Chandrasekaran, Padmapriyadarsini and Kailasam, Nandagopal and Sundaramurthi, Jagadish Chandrabose and Swaminathan, Soumya and Buddolla, Viswanath and Vaniambadi, S. Kalyanaraman and Ramanathan, V. D. and Hanna, Luke Elizabeth (2017) Broad and potent cross clade neutralizing antibodies with multiple specificities in the plasma of HIV-1 subtype C infected individuals. Scientific Reports, 7 (1). ISSN 2045-2322

Ramachandran, Geetha and Agibothu Kupparam, Hemanth Kumar and Vedhachalam, Chandrasekaran and Thiruvengadam, Kannan and Rajagandhi, Vijayalakshmi and Dusthackeer, Azger and Karunaianantham, Ramesh and Jayapal, Lavanya and Swaminathan, Soumya (2017) Factors Influencing Tuberculosis Treatment Outcome in Adult Patients Treated with Thrice-Weekly Regimens in India. Antimicrobial Agents and Chemotherapy, 61 (5). ISSN 0066-4804

Manson, Abigail L and Cohen, Keira A and Abeel, Thomas and Desjardins, Christopher A and Armstrong, Derek T and Barry, Clifton E and Brand, Jeannette and Chapman, Sinéad B and Cho, Sang-Nae and Gabrielian, Andrei and Gomez, James and Jodals, Andreea M and Joloba, Moses and Jureen, Pontus and Lee, Jong Seok and Malinga, Lesibana and Maiga, Mamoudou and Nordenberg, Dale and Noroc, Ecaterina and Romancenco, Elena and Salazar, Alex and Ssengooba, Willy and Velayati, A A and Winglee, Kathryn and Zalutskaya, Aksana and Via, Laura E and Cassell, Gail H and Dorman, Susan E and Ellner, Jerrold and Farnia, Parissa and Galagan, James E and Rosenthal, Alex and Crudu, Valeriu and Homorodean, Daniela and Hsueh, Po-Ren and Narayanan, Sujatha and Pym, Alexander S and Skrahina, Alena and Swaminathan, Soumya and Van der Walt, Martie and Alland, David and Bishai, William R and Cohen, Ted and Hoffner, Sven and Birren, Bruce W and Earl, Ashlee M (2017) Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance. Nature Genetics, 49 (3). pp. 395-402. ISSN 1061-4036

Sundaramurthi, Jagadish Chandrabose and Ashokkumar, Manickam and Swaminathan, Soumya and Hanna, Luke Elizabeth (2017) HLA based selection of epitopes offers a potential window of opportunity for vaccine design against HIV. Vaccine, 35 (42). pp. 5568-5575. ISSN 0264410X

Kumar, Ajay M.V. and Swaminathan, Soumya and Tripathy, Jaya Prasad and Gupta, Vivek and Murali, Lakshmi and Lavanya, J. and Parmar, Malik and Klinton, Joel S. and Nair, Dina and Shewade, Hemant Deepak (2017) Low pre-diagnosis attrition but high pre-treatment attrition among patients with MDR-TB: An operational research from Chennai, India. Journal of Epidemiology and Global Health, 7 (4). p. 227. ISSN 2210-6014

Manson, Abigail L. and Abeel, Thomas and Galagan, James E. and Sundaramurthi, Jagadish Chandrabose and Salazar, Alex and Gehrmann, Thies and Shanmugam, Siva Kumar and Palaniyandi, Kannan and Narayanan, Sujatha and Swaminathan, Soumya and Earl, Ashlee M. (2017) Mycobacterium tuberculosis Whole Genome Sequences From Southern India Suggest Novel Resistance Mechanisms and the Need for Region-Specific Diagnostics. Clinical Infectious Diseases, 64 (11). pp. 1494-1501. ISSN 1058-4838

Ramachandran, Geetha and Hemanth Kumar, AK and Ramesh, K and Kannan, T and Sudha, V and Haribabu, Hemalatha and Lavanya, J and Swaminathan, Soumya (2017) N-acetyltransferase gene polymorphisms & plasma isoniazid concentrations in patients with tuberculosis. Indian Journal of Medical Research, 145 (1). p. 118. ISSN 0971-5916

Mimiaga, Matthew J. and Thomas, Beena and Biello, Katie and Johnson, Blake E. and Swaminathan, Soumya and Navakodi, Pandiyaraja and Balaguru, S. and Dhanalakshmi, A. and Closson, Elizabeth F. and Menon, Sunil and O’Cleirigh, Conall and Mayer, Kenneth H. and Safren, Steven A. (2017) A Pilot Randomized Controlled Trial of an Integrated In-person and Mobile Phone Delivered Counseling and Text Messaging Intervention to Reduce HIV Transmission Risk among Male Sex Workers in Chennai, India. AIDS and Behavior, 21 (11). pp. 3172-3181. ISSN 1090-7165

Manson, Abigail L and Abeel, Thomas and Galagan, James and Sundaramurthi, Jagadish Chandrabose and Shanmugam, Siva Kumar and Palaniyandi, Kannan and Narayanan, Sujatha and Swaminathan, Soumya and Earl, Ashlee M (2017) Reply to Lee and Howden. Clinical Infectious Diseases, 66 (1). pp. 160-161. ISSN 1058-4838

Nakatani, Yoshio and Opel-Reading, Helen K. and Merker, Matthias and Machado, Diana and Andres, Sönke and Kumar, S. Siva and Moradigaravand, Danesh and Coll, Francesc and Perdigão, João and Portugal, Isabel and Schön, Thomas and Nair, Dina and Devi, K. R. Uma and Kohl, Thomas A. and Beckert, Patrick and Clark, Taane G. and Maphalala, Gugu and Khumalo, Derrick and Diel, Roland and Klaos, Kadri and Aung, Htin Lin and Cook, Gregory M. and Parkhill, Julian and Peacock, Sharon J. and Swaminathan, Soumya and Viveiros, Miguel and Niemann, Stefan and Krause, Kurt L. and Köser, Claudio U. (2017) Role of Alanine Racemase Mutations in Mycobacterium tuberculosis d -Cycloserine Resistance. Antimicrobial Agents and Chemotherapy, 61 (12). ISSN 0066-4804

Kumar, Sanjai and Subbaraman, Ramnath and Thomas, Beena E. and Sellappan, Senthil and Suresh, Chandra and Jayabal, Lavanya and Lincy, Savari and Raja, Agnes L. and McFall, Allison and Solomon, Sunil Suhas and Mayer, Kenneth H. and Swaminathan, Soumya (2017) Tuberculosis patients in an Indian mega-city: Where do they live and where are they diagnosed? PLOS ONE, 12 (8). e0183240. ISSN 1932-6203

Sambarey, Awanti and Devaprasad, Abhinandan and Mohan, Abhilash and Ahmed, Asma and Nayak, Soumya and Swaminathan, Soumya and D'Souza, George and Jesuraj, Anto and Dhar, Chirag and Babu, Subash and Vyakarnam, Annapurna and Chandra, Nagasuma (2017) Unbiased Identification of Blood-based Biomarkers for Pulmonary Tuberculosis by Modeling and Mining Molecular Interaction Networks. EBioMedicine, 15. pp. 112-126. ISSN 23523964

Devaleenal Daniel, Bella and Ramachandran, Geetha and Swaminathan, Soumya (2017) The challenges of pharmacokinetic variability of first-line anti-TB drugs. Expert Review of Clinical Pharmacology, 10 (1). pp. 47-58. ISSN 1751-2433

Gupte, Akshay and Padmapriyadarsini, Chandrasekaran and Mave, Vidya and Kadam, Dileep and Suryavanshi, Nishi and Shivakumar, Shri Vijay Bala Yogendra and Kohli, Rewa and Gupte, Nikhil and Thiruvengadam, Kannan and Kagal, Anju and Meshram, Sushant and Bharadwaj, Renu and Khadse, Sandhya and Ramachandran, Geetha and Hanna, Luke Elizabeth and Pradhan, Neeta and Gomathy, N S and DeLuca, Andrea and Gupta, Amita and Swaminathan, Soumya (2016) Cohort for Tuberculosis Research by the Indo-US Medical Partnership (CTRIUMPH): protocol for a multicentric prospective observational study. BMJ Open, 6 (2). e010542. ISSN 2044-6055

Srivastava, Shashikant and Deshpande, Devyani and Pasipanodya, Jotam G. and Thomas, Tania and Swaminathan, Soumya and Nuermberger, Eric and Gumbo, Tawanda (2016) A Combination Regimen Design Program Based on Pharmacodynamic Target Setting for Childhood Tuberculosis: Design Rules for the Playground. Clinical Infectious Diseases, 63 (suppl). S75-S79. ISSN 1058-4838

Deshpande, Devyani and Srivastava, Shashikant and Nuermberger, Eric and Pasipanodya, Jotam G. and Swaminathan, Soumya and Gumbo, Tawanda (2016) Concentration-Dependent Synergy and Antagonism of Linezolid and Moxifloxacin in the Treatment of Childhood Tuberculosis: The Dynamic Duo. Clinical Infectious Diseases, 63 (suppl). S88-S94. ISSN 1058-4838

Gopalan, Narendran and Chandrasekaran, Padmapriyadarsini and Swaminathan, Soumya and Tripathy, Srikanth (2016) Current trends and intricacies in the management of HIV-associated pulmonary tuberculosis. AIDS Research and Therapy, 13 (1). ISSN 1742-6405

Swaminathan, Soumya and Pasipanodya, Jotam G. and Ramachandran, Geetha and Hemanth Kumar, A. K. and Srivastava, Shashikant and Deshpande, Devyani and Nuermberger, Eric and Gumbo, Tawanda (2016) Drug Concentration Thresholds Predictive of Therapy Failure and Death in Children With Tuberculosis: Bread Crumb Trails in Random Forests. Clinical Infectious Diseases, 63 (suppl). S63-S74. ISSN 1058-4838

Wang, Haidong and Wolock, Tim M and Carter, Austin and Nguyen, Grant and Kyu, Hmwe Hmwe and Gakidou, Emmanuela and Hay, Simon I and Mills, Edward J and Trickey, Adam and Msemburi, William and Coates, Matthew M and Mooney, Meghan D and Fraser, Maya S and Sligar, Amber and Salomon, Joshua and Larson, Heidi J and Friedman, Joseph and Abajobir, Amanuel Alemu and Abate, Kalkidan Hassen and Abbas, Kaja M and Razek, Mohamed Magdy Abd El and Abd-Allah, Foad and Abdulle, Abdishakur M and Abera, Semaw Ferede and Abubakar, Ibrahim and Abu-Raddad, Laith J and Abu-Rmeileh, Niveen M E and Abyu, Gebre Yitayih and Adebiyi, Akindele Olupelumi and Adedeji, Isaac Akinkunmi and Adelekan, Ademola Lukman and Adofo, Koranteng and Adou, Arsène Kouablan and Ajala, Oluremi N and Akinyemiju, Tomi F and Akseer, Nadia and Lami, Faris Hasan Al and Al-Aly, Ziyad and Alam, Khurshid and Alam, Noore K M and Alasfoor, Deena and Aldhahri, Saleh Fahed S and Aldridge, Robert William and Alegretti, Miguel Angel and Aleman, Alicia V and Alemu, Zewdie Aderaw and Alfonso-Cristancho, Rafael and Ali, Raghib and Alkerwi, Ala'a and Alla, François and Mohammad, Rajaa and Al-Raddadi, Salem and Alsharif, Ubai and Alvarez, Elena and Alvis-Guzman, Nelson and Amare, Azmeraw T and Amberbir, Alemayehu and Amegah, Adeladza Kofi and Ammar, Walid and Amrock, Stephen Marc and Antonio, Carl Abelardo T and Anwari, Palwasha and Ärnlöv, Johan and Artaman, Al and Asayesh, Hamid and Asghar, Rana Jawad and Assadi, Reza and Atique, Suleman and Atkins, Lydia S and Avokpaho, Euripide Frinel G Arthur and Awasthi, Ashish and Quintanilla, Beatriz Paulina Ayala and Bacha, Umar and Badawi, Alaa and Barac, Aleksandra and Bärnighausen, Till and Basu, Arindam and Bayou, Tigist Assefa and Bayou, Yibeltal Tebekaw and Bazargan-Hejazi, Shahrzad and Beardsley, Justin and Bedi, Neeraj and Bennett, Derrick A and Bensenor, Isabela M and Betsu, Balem Demtsu and Beyene, Addisu Shunu and Bhatia, Eesh and Bhutta, Zulfiqar A and Biadgilign, Sibhatu and Bikbov, Boris and Birlik, Sait Mentes and Bisanzio, Donal and Brainin, Michael and Brazinova, Alexandra and Breitborde, Nicholas J K and Brown, Alexandria and Burch, Michael and Butt, Zahid A and Campuzano, Julio Cesar and Cárdenas, Rosario and Carrero, Juan Jesus and Castañeda-Orjuela, Carlos A and Rivas, Jacqueline Castillo and Catalá-López, Ferrán and Chang, Hsing-Yi and Chang, Jung-chen and Chavan, Laxmikant and Chen, Wanqing and Chiang, Peggy Pei-Chia and Chibalabala, Mirriam and Chisumpa, Vesper Hichilombwe and Choi, Jee-Young Jasmine and Christopher, Devasahayam Jesudas and Ciobanu, Liliana G and Cooper, Cyrus and Dahiru, Tukur and Damtew, Solomon Abrha and Dandona, Lalit and Dandona, Rakhi and das Neves, José and de Jager, Pieter and De Leo, Diego and Degenhardt, Louisa and Dellavalle, Robert P and Deribe, Kebede and Deribew, Amare and Des Jarlais, Don C and Dharmaratne, Samath D and Ding, Eric L and Doshi, Pratik Pinal and Doyle, Kerrie E and Driscoll, Tim R and Dubey, Manisha and Elshrek, Yousef Mohamed and Elyazar, Iqbal and Endries, Aman Yesuf and Ermakov, Sergey Petrovich and Eshrati, Babak and Esteghamati, Alireza and Faghmous, Imad D A and Farinha, Carla Sofia e Sa and Faro, Andre and Farvid, Maryam S and Farzadfar, Farshad and Fereshtehnejad, Seyed-Mohammad and Fernandes, Joao C and Fischer, Florian and Fitchett, Joseph Robert Anderson and Foigt, Nataliya and Fullman, Nancy and Fürst, Thomas and Gankpé, Fortuné Gbètoho and Gebre, Teshome and Gebremedhin, Amanuel Tesfay and Gebru, Alemseged Aregay and Geleijnse, Johanna M and Gessner, Bradford D and Gething, Peter W and Ghiwot, Tsegaye Tewelde and Giroud, Maurice and Gishu, Melkamu Dedefo and Glaser, Elizabeth and Goenka, Shifalika and Goodridge, Amador and Gopalani, Sameer Vali and Goto, Atsushi and Gugnani, Harish Chander and Guimaraes, Mark D C and Gupta, Rahul and Gupta, Rajeev and Gupta, Vipin and Haagsma, Juanita and Hafezi-Nejad, Nima and Hagan, Holly and Hailu, Gessessew Bugssa and Hamadeh, Randah Ribhi and Hamidi, Samer and Hammami, Mouhanad and Hankey, Graeme J and Hao, Yuantao and Harb, Hilda L and Harikrishnan, Sivadasanpillai and Haro, Josep Maria and Harun, Kimani M and Havmoeller, Rasmus and Hedayati, Mohammad T and Heredia-Pi, Ileana Beatriz and Hoek, Hans W and Horino, Masako and Horita, Nobuyuki and Hosgood, H Dean and Hoy, Damian G and Hsairi, Mohamed and Hu, Guoqing and Huang, Hsiang and Huang, John J and Iburg, Kim Moesgaard and Idrisov, Bulat T and Innos, Kaire and Iyer, Veena J and Jacobsen, Kathryn H and Jahanmehr, Nader and Jakovljevic, Mihajlo B and Javanbakht, Mehdi and Jayatilleke, Achala Upendra and Jeemon, Panniyammakal and Jha, Vivekanand and Jiang, Guohong and Jiang, Ying and Jibat, Tariku and Jonas, Jost B and Kabir, Zubair and Kamal, Ritul and Kan, Haidong and Karch, André and Karema, Corine Kakizi and Karletsos, Dimitris and Kasaeian, Amir and Kaul, Anil and Kawakami, Norito and Kayibanda, Jeanne Françoise and Keiyoro, Peter Njenga and Kemp, 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Deshpande, Devyani and Srivastava, Shashikant and Nuermberger, Eric and Pasipanodya, Jotam G. and Swaminathan, Soumya and Gumbo, Tawanda (2016) A Faropenem, Linezolid, and Moxifloxacin Regimen for Both Drug-Susceptible and Multidrug-Resistant Tuberculosis in Children: FLAME Path on the Milky Way. Clinical Infectious Diseases, 63 (suppl). S95-S101. ISSN 1058-4838

Shankar, Esaki M. and Nair, Dina and Rajshekhar, Nandita and Klinton, Joel Shyam and Watson, Basilea and Velayutham, Banurekha and Tripathy, Jaya Prasad and Jawahar, Mohideen Shaheed and Swaminathan, Soumya (2016) Household Contact Screening and Yield of Tuberculosis Cases—A Clinic Based Study in Chennai, South India. PLOS ONE, 11 (9). e0162090. ISSN 1932-6203

Nair, Dina and Navneethapandian, Pooranaganga D. and Tripathy, Jaya Prasad and Harries, Anthony D. and Klinton, Joel S. and Watson, Basilea and Sivaramakrishnan, Gomathi N. and Reddy, Devarajulu S. and Murali, Lakshmi and Natrajan, Mohan and Swaminathan, Soumya (2016) Impact of rapid molecular diagnostic tests on time to treatment initiation and outcomes in patients with multidrug-resistant tuberculosis, Tamil Nadu, India. Transactions of The Royal Society of Tropical Medicine and Hygiene, 110 (9). pp. 534-541. ISSN 0035-9203

Deshpande, Devyani and Srivastava, Shashikant and Pasipanodya, Jotam G. and Bush, Stephen J. and Nuermberger, Eric and Swaminathan, Soumya and Gumbo, Tawanda (2016) Linezolid for Infants and Toddlers With Disseminated Tuberculosis: First Steps. Clinical Infectious Diseases, 63 (suppl). S80-S87. ISSN 1058-4838

Srivastava, Shashikant and Pasipanodya, Jotam G. and Ramachandran, Geetha and Deshpande, Devyani and Shuford, Stephen and Crosswell, Howland E. and Cirrincione, Kayle N. and Sherman, Carleton M. and Swaminathan, Soumya and Gumbo, Tawanda (2016) A Long-term Co-perfused Disseminated Tuberculosis-3D Liver Hollow Fiber Model for Both Drug Efficacy and Hepatotoxicity in Babies. EBioMedicine, 6. pp. 126-138. ISSN 23523964

Ramachandran, Geetha and Kumar, A. K. Hemanth and Kannan, T. and Bhavani, P. K. and Kumar, S. Ramesh and Gangadevi, N. Poorana and Banurekha, V. V. and Sudha, V. and Venkatesh, S. and Ravichandran, N. and Kalpana, S. and Mathevan, G. and Sanjeeva, G. N. and Agarwal, Dipti and Swaminathan, Soumya (2016) Low Serum Concentrations of Rifampicin and Pyrazinamide Associated with Poor Treatment Outcomes in Children with Tuberculosis Related to HIV Status. Pediatric Infectious Disease Journal, 35 (5). pp. 530-534. ISSN 0891-3668

Nusrath Unissa, Ameeruddin and Hanna, Luke Elizabeth and Swaminathan, Soumya (2016) A Note on Derivatives of Isoniazid, Rifampicin, and Pyrazinamide Showing Activity Against ResistantMycobacterium tuberculosis. Chemical Biology & Drug Design, 87 (4). pp. 537-550. ISSN 17470277

Srivastava, Shashikant and Deshpande, Devyani and Pasipanodya, Jotam and Nuermberger, Eric and Swaminathan, Soumya and Gumbo, Tawanda (2016) Optimal Clinical Doses of Faropenem, Linezolid, and Moxifloxacin in Children With Disseminated Tuberculosis: Goldilocks. Clinical Infectious Diseases, 63 (suppl). S102-S109. ISSN 1058-4838

Pai, Madhukar and Thomas, Beena Elizabeth and Velayutham, Banurekha and Thiruvengadam, Kannan and Nair, Dina and Barman, Sukendu Bikas and Jayabal, Lavanya and Ovung, Senthanro and Swaminathan, Soumya (2016) Perceptions of Private Medical Practitioners on Tuberculosis Notification: A Study from Chennai, South India. PLOS ONE, 11 (1). e0147579. ISSN 1932-6203

Swaminathan, Soumya and Sundaramurthi, Jagadish Chandrabose and Palaniappan, Alangudi Natarajan and Narayanan, Sujatha (2016) Recent developments in genomics, bioinformatics and drug discovery to combat emerging drug-resistant tuberculosis. Tuberculosis, 101. pp. 31-40. ISSN 14729792

Landay, Alan and Narendran, Gopalan and Kavitha, Dhanasekaran and Karunaianantham, Ramesh and Gil-Santana, Leonardo and Almeida-Junior, Jilson L. and Reddy, Sirasanambatti Devarajulu and Kumar, Marimuthu Makesh and Hemalatha, Haribabu and Jayanthi, Nagesh Nalini and Ravichandran, Narayanan and Krishnaraja, Raja and Prabhakar, Angamuthu and Manoharan, Tamizhselvan and Nithyananthan, Lokeswaran and Arjunan, Gunasundari and Natrajan, Mohan and Swaminathan, Soumya and Andrade, Bruno B. (2016) Role of LTA4H Polymorphism in Tuberculosis-Associated Immune Reconstitution Inflammatory Syndrome Occurrence and Clinical Severity in Patients Infected with HIV. PLOS ONE, 11 (9). e0163298. ISSN 1932-6203

Sundaramurthi, Jagadish Chandrabose and Hanna, Luke Elizabeth and Selvaraju, Sriram and Brindha, Sridharan and Joel Gnanadoss, J. and Vincent, Savariar and Singh, Harpreet and Swaminathan, Soumya (2016) TBDRUGS – Database of drugs for tuberculosis. Tuberculosis, 100. pp. 69-71. ISSN 14729792

Lienhardt, Christian and Lönnroth, Knut and Menzies, Dick and Balasegaram, Manica and Chakaya, Jeremiah and Cobelens, Frank and Cohn, Jennifer and Denkinger, Claudia M. and Evans, Thomas G. and Källenius, Gunilla and Kaplan, Gilla and Kumar, Ajay M. V. and Matthiessen, Line and Mgone, Charles S. and Mizrahi, Valerie and Mukadi, Ya-diul and Nguyen, Viet Nhung and Nordström, Anders and Sizemore, Christine F. and Spigelman, Melvin and Squire, S. Bertel and Swaminathan, Soumya and Van Helden, Paul D. and Zumla, Alimuddin and Weyer, Karin and Weil, Diana and Raviglione, Mario (2016) Translational Research for Tuberculosis Elimination: Priorities, Challenges, and Actions. PLOS Medicine, 13 (3). e1001965. ISSN 1549-1676

Murray, Megan and Subbaraman, Ramnath and Nathavitharana, Ruvandhi R. and Satyanarayana, Srinath and Pai, Madhukar and Thomas, Beena E. and Chadha, Vineet K. and Rade, Kiran and Swaminathan, Soumya and Mayer, Kenneth H. (2016) The Tuberculosis Cascade of Care in India’s Public Sector: A Systematic Review and Meta-analysis. PLOS Medicine, 13 (10). e1002149. ISSN 1549-1676

Wallis, Robert S and Maeurer, Markus and Mwaba, Peter and Chakaya, Jeremiah and Rustomjee, Roxana and Migliori, Giovanni Battista and Marais, Ben and Schito, Marco and Churchyard, Gavin and Swaminathan, Soumya and Hoelscher, Michael and Zumla, Alimuddin (2016) Tuberculosis—advances in development of new drugs, treatment regimens, host-directed therapies, and biomarkers. The Lancet Infectious Diseases, 16 (4). e34-e46. ISSN 14733099

Padmapriyadarsini, C and Shobana, M and Lakshmi, M and Beena, T and Swaminathan, Soumya (2016) Undernutrition & tuberculosis in India: Situation analysis & the way forward. Indian Journal of Medical Research, 144 (1). p. 11. ISSN 0971-5916

Dusthackeer, Azger and Sekar, Gomathi and Chidambaram, Shambhavi and Kumar, Vanaja and Mehta, Pranav and Swaminathan, Soumya (2015) Drug resistance among extrapulmonary TB patients: Six years experience from a supranational reference laboratory. The Indian journal of medical research, 142 (5). pp. 568-74. ISSN 0971-5916

Thomas, Beena E and Adinarayanan, Srividya and Manogaran, C and Swaminathan, Soumya (2015) Pulmonary tuberculosis among tribals in India: A systematic review & meta-analysis. The Indian journal of medical research, 141 (5). pp. 614-23. ISSN 0971-5916

Shet, Anita and Bhavani, PK and Kumarasamy, N. and Arumugam, Karthika and Poongulali, S. and Elumalai, Suresh and Swaminathan, Soumya (2015) Anemia, diet and therapeutic iron among children living with HIV: a prospective cohort study. BMC Pediatrics, 15 (1). ISSN 1471-2431

Hanna, Luke Elizabeth and Siromany, Valan Adimai and Annamalai, Madheswaran and Karunaianantham, Ramesh and Swaminathan, Soumya (2015) Challenges in the early diagnosis of HIV infection in infants: Experience from Tamil Nadu, India. Indian Pediatrics, 52 (4). pp. 307-309. ISSN 0019-6061

Rangaka, Molebogeng X and Cavalcante, Solange C and Marais, Ben J and Thim, Sok and Martinson, Neil A and Swaminathan, Soumya and Chaisson, Richard E (2015) Controlling the seedbeds of tuberculosis: diagnosis and treatment of tuberculosis infection. The Lancet, 386 (10010). pp. 2344-2353. ISSN 01406736

Singh, Jitendra and Sankar, Manimuthu Mani and Kumar, Parveen and Couvin, David and Rastogi, Nalin and Singh, Sarman and Katoch, V.M. and Chauhan, D.S. and Katoch, Kiran and Rodrigues, Camila and Lakshmi, V. and Taori, G.M. and Daginawala, H.F. and Singh, Rajpal and Bhattacharya, Basudev and Choudhury, Bandana and Singh, Niti and Devi, Uma and Swaminathan, Soumya (2015) Genetic diversity and drug susceptibility profile of Mycobacterium tuberculosis isolated from different regions of India. Journal of Infection, 71 (2). pp. 207-219. ISSN 01634453

Forouzanfar, Mohammad H and Alexander, Lily and Anderson, H Ross and Bachman, Victoria F and Biryukov, Stan and Brauer, Michael and Burnett, Richard and Casey, Daniel and Coates, Matthew M and Cohen, Aaron and Delwiche, Kristen and Estep, Kara and Frostad, Joseph J and KC, Astha and Kyu, Hmwe H and Moradi-Lakeh, Maziar and Ng, Marie and Slepak, Erica Leigh and Thomas, Bernadette A and Wagner, Joseph and Aasvang, Gunn Marit and Abbafati, Cristiana and Ozgoren, Ayse Abbasoglu and Abd-Allah, Foad and Abera, Semaw F and Aboyans, Victor and Abraham, Biju and Abraham, Jerry Puthenpurakal and Abubakar, Ibrahim and Abu-Rmeileh, Niveen M E and Aburto, Tania C and Achoki, Tom and Adelekan, Ademola and Adofo, Koranteng and Adou, Arsène K and Adsuar, José C and Afshin, Ashkan and Agardh, Emilie E and Al Khabouri, Mazin J and Al Lami, Faris H and Alam, Sayed Saidul and Alasfoor, Deena and Albittar, Mohammed I and Alegretti, Miguel A and Aleman, Alicia V and Alemu, Zewdie A and Alfonso-Cristancho, 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Seenivasan, Subramani and Vaitheeswaran, Natarajan and Seetha, Viswanathan and Anbalagan, Selvaraj and Karunaianantham, Ramesh and Swaminathan, Soumya (2015) Outcome of prevention of parent-to-child transmission of HIV in an urban population in Southern India. Indian Pediatrics, 52 (9). pp. 759-762. ISSN 0019-6061

Ramachandran, Geetha and Kumar, A. K. Hemanth and Bhavani, P. K. and Kannan, T. and Kumar, S. Ramesh and Gangadevi, N. Poorana and Banurekha, V. V. and Sekar, L. and Ravichandran, N. and Mathevan, G. and Sanjeeva, G. N. and Dayal, Rajeshwar and Swaminathan, Soumya (2015) Pharmacokinetics of First-Line Antituberculosis Drugs in HIV-Infected Children with Tuberculosis Treated with Intermittent Regimens in India. Antimicrobial Agents and Chemotherapy, 59 (2). pp. 1162-1167. ISSN 0066-4804

Fernandez-Reyes, Delmiro and Raizada, Neeraj and Sachdeva, Kuldeep Singh and Swaminathan, Soumya and Kulsange, Shubhangi and Khaparde, Sunil D. and Nair, Sreenivas Achuthan and Khanna, Ashwani and Chopra, Kamal Kishore and Hanif, Mahmud and Sethi, Gulshan Rai and Umadevi, K. R. and Keshav Chander, G. and Saha, Brojakishore and Shah, Amar and Parmar, Malik and Ghediya, Mayank and Jaju, Jyoti and Boehme, Catharina and Paramasivan, Chinnambedu Nainarappan (2015) Piloting Upfront Xpert MTB/RIF Testing on Various Specimens under Programmatic Conditions for Diagnosis of TB & DR-TB in Paediatric Population. PLOS ONE, 10 (10). e0140375. ISSN 1932-6203

Tan, Hong Yien and Yong, Yean Kong and Andrade, Bruno B. and Shankar, Esaki M. and Ponnampalavanar, Sasheela and Omar, Sharifah F.S. and Narendran, Gopalan and Kamarulzaman, Adeeba and Swaminathan, Soumya and Sereti, Irini and Crowe, Suzanne M. and French, Martyn A. (2015) Plasma interleukin-18 levels are a biomarker of innate immune responses that predict and characterize tuberculosis-associated immune reconstitution inflammatory syndrome. AIDS, 29 (4). pp. 421-431. ISSN 0269-9370

Tyagi, Anil Kumar and Dhanaraj, Baskaran and Papanna, Mohan Kumar and Adinarayanan, Srividya and Vedachalam, Chandrasekaran and Sundaram, Vijayaraj and Shanmugam, Shivakumar and Sekar, Gomathi and Menon, Pradeep Aravindan and Wares, Fraser and Swaminathan, Soumya (2015) Prevalence and Risk Factors for Adult Pulmonary Tuberculosis in a Metropolitan City of South India. PLOS ONE, 10 (4). e0124260. ISSN 1932-6203

Hamilton, Carol D. and Swaminathan, Soumya and Christopher, Devasahayam J. and Ellner, Jerrold and Gupta, Amita and Sterling, Timothy R. and Rolla, Valeria and Srinivasan, Sudha and Karyana, Muhammad and Siddiqui, Sophia and Stoszek, Sonia K. and Kim, Peter (2015) RePORT International: Advancing Tuberculosis Biomarker Research Through Global Collaboration. Clinical Infectious Diseases, 61 (suppl). S155-S159. ISSN 1058-4838

Ramachandran, Geetha and Swaminathan, Soumya (2015) Safety and Tolerability Profile of Second-Line Anti-Tuberculosis Medications. Drug Safety, 38 (3). pp. 253-269. ISSN 0114-5916

Gupta, Amita and Mathad, Jyoti S. and Abdel-Rahman, Susan M. and Albano, Jessica D. and Botgros, Radu and Brown, Vikki and Browning, Renee S. and Dawson, Liza and Dooley, Kelly E. and Gnanashanmugam, Devasena and Grinsztejn, Beatriz and Hernandez-Diaz, Sonia and Jean-Philippe, Patrick and Kim, Peter and Lyerly, Anne D. and Mirochnick, Mark and Mofenson, Lynne M. and Montepiedra, Grace and Piper, Jeanna and Sahin, Leyla and Savic, Radojka and Smith, Betsy and Spiegel, Hans and Swaminathan, Soumya and Watts, D. Heather and White, Amina (2015) Toward Earlier Inclusion of Pregnant and Postpartum Women in Tuberculosis Drug Trials: Consensus Statements From an International Expert Panel. Clinical Infectious Diseases, 62 (6). pp. 761-769. ISSN 1058-4838

Nachman, Sharon and Ahmed, Amina and Amanullah, Farhana and Becerra, Mercedes C and Botgros, Radu and Brigden, Grania and Browning, Renee and Gardiner, Elizabeth and Hafner, Richard and Hesseling, Anneke and How, Cleotilde and Jean-Philippe, Patrick and Lessem, Erica and Makhene, Mamodikoe and Mbelle, Nontombi and Marais, Ben and McIlleron, Helen and McNeeley, David F and Mendel, Carl and Murray, Stephen and Navarro, Eileen and Anyalechi, E Gloria and Porcalla, Ariel R and Powell, Clydette and Powell, Mair and Rigaud, Mona and Rouzier, Vanessa and Samson, Pearl and Schaaf, H Simon and Shah, Seema and Starke, Jeff and Swaminathan, Soumya and Wobudeya, Eric and Worrell, Carol (2015) Towards early inclusion of children in tuberculosis drugs trials: a consensus statement. The Lancet Infectious Diseases, 15 (6). pp. 711-720. ISSN 14733099

Bentwich, Zvi and Talaat, Kawsar R. and Babu, Subash and Menon, Pradeep and Kumarasamy, N. and Sharma, Jabin and Arumugam, Jeeva and Dhakshinamurthy, Kalaivani and Srinivasan, Ramalingam and Poongulali, S. and Gu, Wenjuan and Fay, Michael P. and Swaminathan, Soumya and Nutman, Thomas B. (2015) Treatment of W. bancrofti (Wb) in HIV/Wb Coinfections in South India. PLOS Neglected Tropical Diseases, 9 (3). e0003622. ISSN 1935-2735

Mistry, Nerges and Velayutham, Banurekha and Thomas, Beena and Nair, Dina and Thiruvengadam, Kannan and Prashant, Suma and Kittusami, Sathyapriya and Vijayakumar, Harivanzan and Chidambaram, Meenachi and Shivakumar, Shri Vijay Bala Yogendra and Jayabal, Lavanya and Jhunjhunwala, Ashok and Swaminathan, Soumya (2015) The Usefulness and Feasibility of Mobile Interface in Tuberculosis Notification (MITUN) Voice Based System for Notification of Tuberculosis by Private Medical Practitioners – A Pilot Project. PLOS ONE, 10 (9). e0138274. ISSN 1932-6203

Swaminathan, Soumya (2014) Tuberculosis in India--can we ensure a test, treatment & cure for all? The Indian journal of medical research, 139 (3). pp. 333-6. ISSN 0971-5916

Kumar, Ramesh and Menon, Pradeep A and Ponnuraja, C and Padmapriyadarsini, C and Narendran, G and Iliayas, Sheik and Subramanyam, Sudha and Kumar, Vanaja and Swaminathan, Soumya (2014) HIV-infected patients retreated for tuberculosis with intermittent Category II regimen--treatment outcome at 24-month follow-up. The Indian journal of tuberculosis, 61 (1). pp. 43-50. ISSN 0019-5707

Becerra, Mercedes C and Swaminathan, Soumya (2014) Commentary: A targets framework: Dismantling the invisibility trap for children with drug-resistant tuberculosis. Journal of Public Health Policy, 35 (4). pp. 425-454. ISSN 0197-5897

Murray, Christopher J L and Ortblad, Katrina F and Guinovart, Caterina and Lim, Stephen S and Wolock, Timothy M and Roberts, D Allen and Dansereau, Emily A and Graetz, Nicholas and Barber, Ryan M and Brown, Jonathan C and Wang, Haidong and Duber, Herbert C and Naghavi, Mohsen and Dicker, Daniel and Dandona, Lalit and Salomon, Joshua A and Heuton, Kyle R and Foreman, Kyle and Phillips, David E and Fleming, Thomas D and Flaxman, Abraham D and Phillips, Bryan K and Johnson, Elizabeth K and Coggeshall, Megan S and Abd-Allah, Foad and Abera, Semaw Ferede and Abraham, Jerry P and Abubakar, Ibrahim and Abu-Raddad, Laith J and Abu-Rmeileh, Niveen Me and Achoki, Tom and Adeyemo, Austine Olufemi and Adou, Arsène Kouablan and Adsuar, José C and Agardh, Emilie Elisabet and Akena, Dickens and Al Kahbouri, Mazin J and Alasfoor, Deena and Albittar, Mohammed I and Alcalá-Cerra, Gabriel and Alegretti, Miguel Angel and Alemu, Zewdie Aderaw and Alfonso-Cristancho, Rafael and Alhabib, Samia and Ali, Raghib and Alla, Francois and Allen, Peter J and Alsharif, Ubai and Alvarez, Elena and Alvis-Guzman, Nelson and Amankwaa, Adansi A and Amare, Azmeraw T and Amini, Hassan and Ammar, Walid and Anderson, Benjamin O and Antonio, Carl Abelardo T and Anwari, Palwasha and Ärnlöv, Johan and Arsenijevic, Valentina S Arsic and Artaman, Ali and Asghar, Rana J and Assadi, Reza and Atkins, Lydia S and Badawi, Alaa and Balakrishnan, Kalpana and Banerjee, Amitava and Basu, Sanjay and Beardsley, Justin and Bekele, Tolesa and Bell, Michelle L and Bernabe, Eduardo and Beyene, Tariku Jibat and Bhala, Neeraj and Bhalla, Ashish and Bhutta, Zulfiqar A and Abdulhak, Aref Bin and Binagwaho, Agnes and Blore, Jed D and Basara, Berrak Bora and Bose, Dipan and Brainin, Michael and Breitborde, Nicholas and Castañeda-Orjuela, Carlos A and Catalá-López, Ferrán and Chadha, Vineet K and Chang, Jung-Chen and Chiang, Peggy Pei-Chia and Chuang, Ting-Wu and Colomar, Mercedes and Cooper, Leslie Trumbull and Cooper, Cyrus and Courville, Karen J and Cowie, Benjamin C and Criqui, Michael H and Dandona, Rakhi and Dayama, Anand and De Leo, Diego and Degenhardt, Louisa and Del Pozo-Cruz, Borja and Deribe, Kebede and Des Jarlais, Don C and Dessalegn, Muluken and Dharmaratne, Samath D and Dilmen, Uğur and Ding, Eric L and Driscoll, Tim R and Durrani, Adnan M and Ellenbogen, Richard G and Ermakov, Sergey Petrovich and Esteghamati, Alireza and Faraon, Emerito Jose A and Farzadfar, Farshad and Fereshtehnejad, Seyed-Mohammad and Fijabi, Daniel Obadare and Forouzanfar, Mohammad H and Fra.Paleo, Urbano and Gaffikin, Lynne and Gamkrelidze, Amiran and Gankpé, Fortuné Gbètoho and Geleijnse, Johanna M and Gessner, Bradford D and Gibney, Katherine B and Ginawi, Ibrahim Abdelmageem Mohamed and Glaser, Elizabeth L and Gona, Philimon and Goto, Atsushi and Gouda, Hebe N and Gugnani, Harish Chander and Gupta, Rajeev and Gupta, Rahul and Hafezi-Nejad, Nima and Hamadeh, Randah Ribhi and Hammami, Mouhanad and Hankey, Graeme J and Harb, Hilda L and Haro, Josep Maria and Havmoeller, Rasmus and Hay, Simon I and Hedayati, Mohammad T and Pi, Ileana B Heredia and Hoek, Hans W and Hornberger, John C and Hosgood, H Dean and Hotez, Peter J and Hoy, Damian G and Huang, John J and Iburg, Kim M and Idrisov, Bulat T and Innos, Kaire and Jacobsen, Kathryn H and Jeemon, Panniyammakal and Jensen, Paul N and Jha, Vivekanand and Jiang, Guohong and Jonas, Jost B and Juel, Knud and Kan, Haidong and Kankindi, Ida and Karam, Nadim E and Karch, André and Karema, Corine Kakizi and Kaul, Anil and Kawakami, Norito and Kazi, Dhruv S and Kemp, Andrew H and Kengne, Andre Pascal and Keren, Andre and Kereselidze, Maia and Khader, Yousef Saleh and Khalifa, Shams Eldin Ali Hassan and Khan, Ejaz Ahmed and Khang, Young-Ho and Khonelidze, Irma and Kinfu, Yohannes and Kinge, Jonas M and Knibbs, Luke and Kokubo, Yoshihiro and Kosen, S and Defo, Barthelemy Kuate and Kulkarni, Veena S and Kulkarni, Chanda and Kumar, Kaushalendra and Kumar, Ravi B and Kumar, G Anil and Kwan, Gene F and Lai, Taavi and Balaji, Arjun Lakshmana and Lam, Hilton and Lan, Qing and Lansingh, Van C and Larson, Heidi J and Larsson, Anders and Lee, Jong-Tae and Leigh, James and Leinsalu, Mall and Leung, Ricky and Li, Yichong and Li, Yongmei and De Lima, Graça Maria Ferreira and Lin, Hsien-Ho and Lipshultz, Steven E and Liu, Shiwei and Liu, Yang and Lloyd, Belinda K and Lotufo, Paulo A and Machado, Vasco Manuel Pedro and Maclachlan, Jennifer H and Magis-Rodriguez, Carlos and Majdan, Marek and Mapoma, Christopher Chabila and Marcenes, Wagner and Marzan, Melvin Barrientos and Masci, Joseph R and Mashal, Mohammad Taufiq and Mason-Jones, Amanda J and Mayosi, Bongani M and Mazorodze, Tasara T and Mckay, Abigail Cecilia and Meaney, Peter A and Mehndiratta, Man Mohan and Mejia-Rodriguez, Fabiola and Melaku, Yohannes Adama and Memish, Ziad A and Mendoza, Walter and Miller, Ted R and Mills, Edward J and Mohammad, Karzan Abdulmuhsin and Mokdad, Ali H and Mola, Glen Liddell and Monasta, Lorenzo and Montico, Marcella and Moore, Ami R and Mori, Rintaro and Moturi, Wilkister Nyaora and Mukaigawara, Mitsuru and Murthy, Kinnari S and Naheed, Aliya and Naidoo, Kovin S and Naldi, Luigi and Nangia, Vinay and Narayan, K M Venkat and Nash, Denis and Nejjari, Chakib and Nelson, Robert G and Neupane, Sudan Prasad and Newton, Charles R and Ng, Marie and Nisar, Muhammad Imran and Nolte, Sandra and Norheim, Ole F and Nowaseb, Vincent and Nyakarahuka, Luke and Oh, In-Hwan and Ohkubo, Takayoshi and Olusanya, Bolajoko O and Omer, Saad B and Opio, John Nelson and Orisakwe, Orish Ebere and Pandian, Jeyaraj D and Papachristou, Christina and Caicedo, Angel J Paternina and Patten, Scott B and Paul, Vinod K and Pavlin, Boris Igor and Pearce, Neil and Pereira, David M and Pervaiz, Aslam and Pesudovs, Konrad and Petzold, Max and Pourmalek, Farshad and Qato, Dima and Quezada, Amado D and Quistberg, D Alex and Rafay, Anwar and Rahimi, Kazem and Rahimi-Movaghar, Vafa and Rahman, Sajjad Ur and Raju, Murugesan and Rana, Saleem M and Razavi, Homie and Reilly, Robert Quentin and Remuzzi, Giuseppe and Richardus, Jan Hendrik and Ronfani, Luca and Roy, Nobhojit and Sabin, Nsanzimana and Saeedi, Mohammad Yahya and Sahraian, Mohammad Ali and Samonte, Genesis May J and Sawhney, Monika and Schneider, Ione J C and Schwebel, David C and Seedat, Soraya and Sepanlou, Sadaf G and Servan-Mori, Edson E and Sheikhbahaei, Sara and Shibuya, Kenji and Shin, Hwashin Hyun and Shiue, Ivy and Shivakoti, Rupak and Sigfusdottir, Inga Dora and Silberberg, Donald H and Silva, Andrea P and Simard, Edgar P and Singh, Jasvinder A and Skirbekk, Vegard and Sliwa, Karen and Soneji, Samir and Soshnikov, Sergey S and Sreeramareddy, Chandrashekhar T and Stathopoulou, Vasiliki Kalliopi and Stroumpoulis, Konstantinos and Swaminathan, Soumya and Sykes, Bryan L and Tabb, Karen M and Talongwa, Roberto Tchio and Tenkorang, Eric Yeboah and Terkawi, Abdullah Sulieman and Thomson, Alan J and Thorne-Lyman, Andrew L and Towbin, Jeffrey A and Traebert, Jefferson and Tran, Bach X and Dimbuene, Zacharie Tsala and Tsilimbaris, Miltiadis and Uchendu, Uche S and Ukwaja, Kingsley N and Uzun, Selen Begüm and Vallely, Andrew J and Vasankari, Tommi J and Venketasubramanian, N and Violante, Francesco S and Vlassov, Vasiliy Victorovich and Vollset, Stein Emil and Waller, Stephen and Wallin, Mitchell T and Wang, Linhong and Wang, XiaoRong and Wang, Yanping and Weichenthal, Scott and Weiderpass, Elisabete and Weintraub, Robert G and Westerman, Ronny and White, Richard A and Wilkinson, James D and Williams, Thomas Neil and Woldeyohannes, Solomon Meseret and Wong, John Q and Xu, Gelin and Yang, Yang C and Yano, Yuichiro and Yentur, Gokalp Kadri and Yip, Paul and Yonemoto, Naohiro and Yoon, Seok-Jun and Younis, Mustafa and Yu, Chuanhua and Jin, Kim Yun and El Sayed Zaki, Maysaa and Zhao, Yong and Zheng, Yingfeng and Zhou, Maigeng and Zhu, Jun and Zou, Xiao Nong and Lopez, Alan D and Vos, Theo (2014) Global, regional, and national incidence and mortality for HIV, tuberculosis, and malaria during 1990–2013: a systematic analysis for the Global Burden of Disease Study 2013. The Lancet, 384 (9947). pp. 1005-1070. ISSN 01406736

Pilakka-Kanthikeel, Sudheesh and Kris, Arheart and Selvaraj, Anbalagan and Swaminathan, Soumya and Pahwa, Savita (2014) Immune Activation Is Associated With Increased Gut Microbial Translocation in Treatment-Naive, HIV-Infected Children in a Resource-Limited Setting. JAIDS Journal of Acquired Immune Deficiency Syndromes, 66 (1). pp. 16-24. ISSN 1525-4135

Silvestri, Guido and Andrade, Bruno B. and Singh, Amrit and Narendran, Gopalan and Schechter, Melissa E. and Nayak, Kaustuv and Subramanian, Sudha and Anbalagan, Selvaraj and Jensen, Stig M. R. and Porter, Brian O. and Antonelli, Lis R. and Wilkinson, Katalin A. and Wilkinson, Robert J. and Meintjes, Graeme and van der Plas, Helen and Follmann, Dean and Barber, Daniel L. and Swaminathan, Soumya and Sher, Alan and Sereti, Irini (2014) Mycobacterial Antigen Driven Activation of CD14++CD16− Monocytes Is a Predictor of Tuberculosis-Associated Immune Reconstitution Inflammatory Syndrome. PLoS Pathogens, 10 (10). e1004433. ISSN 1553-7374

Hanna, Luke Elizabeth and Neogi, Ujjwal and Ranga, Udaykumar and Swaminathan, Soumya and Prasad, Vinayaka R. (2014) Phylogenetic Characterization of Six Full-Length HIV-1 Subtype C Molecular Clones from Three Patients: Identification of Rare Subtype C Strains Containing Two NF-κB Motifs in the Long Terminal Repeat. AIDS Research and Human Retroviruses, 30 (6). pp. 586-591. ISSN 0889-2229

Safren, Steven A. and Thomas, Beena E. and Mayer, Kenneth H. and Biello, Katie B. and Mani, Jamuna and Rajagandhi, Vijaylakshmi and Periyasamy, Murugesan and Swaminathan, Soumya and Mimiaga, Matthew J. (2014) A Pilot RCT of an Intervention to Reduce HIV Sexual Risk and Increase Self-acceptance Among MSM in Chennai, India. AIDS and Behavior, 18 (10). pp. 1904-1912. ISSN 1090-7165

Thomas, Beena E. and Charles, Niruparani and Watson, Basilea and Chandrasekaran, V. and Senthil Kumar, R. and Dhanalakshmi, A. and Wares, Fraser and Swaminathan, Soumya (2014) Prevalence of chest symptoms amongst brick kiln migrant workers and care seeking behaviour: a study from South India. Journal of Public Health. fdu104. ISSN 1741-3842

Swaminathan, Soumya (2014) Preventive treatment for tuberculosis in people with HIV. The Lancet, 384 (9944). pp. 644-646. ISSN 01406736

Cattamanchi, Adithya and Velayutham, Banu Rekha Vaithilingam and Nair, Dina and Chandrasekaran, Vedachalam and Raman, Balambal and Sekar, Gomathy and Watson, Basilea and Charles, Niruparani and Malaisamy, Muniyandi and Thomas, Aleyamma and Swaminathan, Soumya (2014) Profile and Response to Anti-Tuberculosis Treatment among Elderly Tuberculosis Patients Treated under the TB Control Programme in South India. PLoS ONE, 9 (3). e88045. ISSN 1932-6203

Jawahar, M.S. and Swaminathan, Soumya (2014) Rifamycin drugs as alternatives to standard isoniazid treatment to prevent active tuberculosis (TB) in HIV-negative people at risk of developing active TB. Clinical Epidemiology and Global Health, 2 (1). pp. 37-38. ISSN 22133984

Swaminathan, Soumya and Chandrasekaran, Padmapriyadarsini (2014) Tuberculosis screening and isoniazid preventive therapy implementation: a Brazilian experience. Expert Review of Anti-infective Therapy, 12 (3). pp. 289-292. ISSN 1478-7210

Gopalan, Narendran and Andrade, Bruno Bezerril and Swaminathan, Soumya (2014) Tuberculosis-immune reconstitution inflammatory syndrome in HIV: from pathogenesis to prediction. Expert Review of Clinical Immunology, 10 (5). pp. 631-645. ISSN 1744-666X

Ramachandran, Geetha and Kumar, A K Hemanth and Ponnuraja, C and Ramesh, K and Rajesh, Lakshmi and Chandrasekharan, C and Swaminathan, Soumya (2013) Lack of association between plasma levels of non-nucleoside reverse transcriptase inhibitors & virological outcomes during rifampicin co-administration in HIV-infected TB patients. The Indian journal of medical research, 138 (6). pp. 955-61. ISSN 0971-5916

Tang, Jianming and Venkatesh, Kartik K. and Becker, Jessica E. and Kumarasamy, Nagalingeswaran and Nakamura, Yoriko M. and Mayer, Kenneth H. and Losina, Elena and Swaminathan, Soumya and Flanigan, Timothy P. and Walensky, Rochelle P. and Freedberg, Kenneth A. (2013) Clinical Impact and Cost-Effectiveness of Expanded Voluntary HIV Testing in India. PLoS ONE, 8 (5). e64604. ISSN 1932-6203

Selvaraj, Anbalagan and Pilakka-Kanthikeel, Sudheesh and Bhavani, Perumal Kannabiran and Hanna, Luke E. and Pahwa, Savita and Swaminathan, Soumya (2013) Defective dendritic cell response to Toll-like receptor 7/8 agonists in perinatally HIV-infected children. Pathogens and Disease, 69 (3). pp. 184-193. ISSN 2049632X

Padmapriyadarsini, C. and Bhavani, P.K. and Tang, Alice and Kumar, Hemanth and Ponnuraja, C. and Narendran, G. and Hannah, Elizabeth and Ramesh, C. and Chandrasekar, C. and Wanke, Christine and Swaminathan, Soumya (2013) Early changes in hepatic function among HIV–tuberculosis patients treated with nevirapine or efavirenz along with rifampin-based anti-tuberculosis therapy. International Journal of Infectious Diseases, 17 (12). e1154-e1159. ISSN 12019712

Ramachandran, Geetha and Chandrasekaran, Vedachalam and Hemanth Kumar, Agibothu Kupparam and Dewan, Puneet and Swaminathan, Soumya and Thomas, Aleyamma (2013) Estimation of content of anti-TB drugs supplied at centres of the Revised National TB Control Programme in Tamil Nadu, India. Tropical Medicine & International Health, 18 (9). pp. 1141-1144. ISSN 13602276

Padmapriyadarsini, Chandrasekaran and Tripathy, Srikanth and Sekar, Lakshmanan and Bhavani, Perumal Kannabiran and Gaikwad, Nitin and Annadurai, Srinivasan and Narendran, Gopalan and Selvakumar, Nagamiah and Risbud, Arun R. and Sheta, Dinesh and Rajasekaran, Sikhamani and Thomas, Aleyamma and Wares, Fraser and Swaminathan, Soumya (2013) Evaluation of a Diagnostic Algorithm for Sputum Smear–Negative Pulmonary Tuberculosis in HIV-Infected Adults. JAIDS Journal of Acquired Immune Deficiency Syndromes, 63 (3). pp. 331-338. ISSN 1525-4135

Wilkinson, Robert J. and Narendran, Gopalan and Andrade, Bruno B. and Porter, Brian O. and Chandrasekhar, Chockalingam and Venkatesan, Perumal and Menon, Pradeep A. and Subramanian, Sudha and Anbalagan, Selvaraj and Bhavani, Kannabiran P. and Sekar, Sathiyavelu and Padmapriyadarshini, Chandrasekaran and Kumar, Satagopan and Ravichandran, Narayanan and Raja, Krishnaraj and Bhanu, Kesavamurthy and Mahilmaran, Ayyamperumal and Sekar, Lakshmanan and Sher, Alan and Sereti, Irini and Swaminathan, Soumya (2013) Paradoxical Tuberculosis Immune Reconstitution Inflammatory Syndrome (TB-IRIS) in HIV Patients with Culture Confirmed Pulmonary Tuberculosis in India and the Potential Role of IL-6 in Prediction. PLoS ONE, 8 (5). e63541. ISSN 1932-6203

Pai, Madhukar and Chockalingam, Kolappan and Vedhachalam, Chandrasekaran and Rangasamy, Subramani and Sekar, Gomathi and Adinarayanan, Srividya and Swaminathan, Soumya and Menon, Pradeep Aravindan (2013) Prevalence of Tobacco Use in Urban, Semi Urban and Rural Areas in and around Chennai City, India. PLoS ONE, 8 (10). e76005. ISSN 1932-6203

Marais, Ben J and Lönnroth, Knut and Lawn, Stephen D and Migliori, Giovanni Battista and Mwaba, Peter and Glaziou, Philippe and Bates, Matthew and Colagiuri, Ruth and Zijenah, Lynn and Swaminathan, Soumya and Memish, Ziad A and Pletschette, Michel and Hoelscher, Michael and Abubakar, Ibrahim and Hasan, Rumina and Zafar, Afia and Pantaleo, Guiseppe and Craig, Gill and Kim, Peter and Maeurer, Markus and Schito, Marco and Zumla, Alimuddin (2013) Tuberculosis comorbidity with communicable and non-communicable diseases: integrating health services and control efforts. The Lancet Infectious Diseases, 13 (5). pp. 436-448. ISSN 14733099

Swaminathan, Soumya and Banu Rekha, V V (2012) Antigen detection as a point-of-care test for TB: the case of lipoarabinomannan. Future Microbiology, 7 (5). pp. 559-564. ISSN Print: 1746-0913 | Electronic: 1746-0921

Pho, M T and Swaminathan, Soumya and Kumaraswamy, N and Losina, E and Ponnuraja, C and Uhler, L M and Scott, C |A and Mayer, K H and Freedberg, K A and Walensky, R P (2012) The Cost-Effectiveness of Tuberculosis Preventive Therapy for HIV-Infected Individuals in Southern India: A Trial-Based Analysis. PLoS One, 7 (4). pp. 1-10. ISSN Electronic: 1932-6203

Kranzer, Katharina and Swaminathan, Soumya and Menon, Pradeep Aravindan and Gopalan, Narendran and Perumal, Venkatesan and Santhanakrishnan, Ramesh Kumar and Ramachandran, Ranjani and Chinnaiyan, Ponnuraja and Iliayas, Sheik and Chandrasekaran, Padmapriyadarsini and Navaneethapandian, Pooranaganga Devi and Elangovan, Thiruvalluvan and Pho, Mai Tuyet and Wares, Fraser and Paranji RamaIyengar, Narayanan (2012) Efficacy of a Six-Month versus a 36-Month Regimen for Prevention of Tuberculosis in HIV-Infected Persons in India: A Randomized Clinical Trial. PLoS ONE, 7 (12). e47400. ISSN 1932-6203

Graham, S M and Ahmed, M and Amanullah, F and Browning, R and Cardenas, V and Casenghi, M and Cuevas, L E and Gale, M and Gie, R P and Gizemska, M and Handelsman, Ed and Hatherill, M and Hesseling, A C and Jean-Phillippe, P and Kampmann, B and Kabra, S K and Lienhardt, C and Lighter-Fisher, J and Madhi, S and Makhene, M and Marais, B and McNeeley, D F and Menzies, H and Mitchel, C and Modi, S and Mofenson, L and Musoke, P and Nachman, S and Powell, C and Rigaud, M and Rouzier, V and Starke, J R and Swaminathan, Soumya and Wingfield, C (2012) Evaluation of tuberculosis diagnostics in children: 1. Proposed clinical case definitions for classification of intrathoracic tuberculosis disease. Consensus from an expert panel. Journal of Infectious Diseases, 205 (Supl.2). S199-S208. ISSN Print: 0022-1899 | Electronic: 1537-6613

Kumar, S Ramesh and Gopalan, Narendran and Patrawalla, Paru and Menon, Pradeep and Mayer, Kenneth and Swaminathan, Soumya (2012) Immune reconstitution inflammatory syndrome in HIV-infected patients with and without prior tuberculosis. International Journal of STD & AIDS, 23 (6). pp. 419-423. ISSN 0956-4624

Sundaramurthi, Jagadish Chandrabose and Swaminathan, Soumya and Hanna, Luke Elizabeth (2012) Resistance-associated epitopes of HIV-1C—highly probable candidates for a multi-epitope vaccine. Immunogenetics, 64 (10). pp. 767-772. ISSN 0093-7711

Swaminathan, Soumya (2012) Role of Interferon Gamma Release Assays in Childhood Tuberculosis. Indian Journal of Pediatrics, 79 (2). pp. 250-252. ISSN Print: 0019-5456 Electronic: 0973-7693

Swaminathan, Soumya and Ramachandran, Geetha (2012) Role of pharmacogenomics in the treatment of tuberculosis: a review. Pharmacogenomics and Personalized Medicine, 5. pp. 89-98. ISSN 1178-7066

McNerney, R and Maeurer, M and Abubakar, I and Marais, B and McHugh, T D and Ford, N and Weyer, K and Lawn, S and Grobusch, M P and Memish, Z and Squire, S B and Pantaleo, G and Chakaya,, J et. al and Swaminathan, Soumya (2012) Tuberculosis Diagnostics and Biomarkers: Challenges, Recent Advances, and Opportunities. Journal of Infectious Diseases, 205 (Supl.2). S147-S158. ISSN Print: 0022-1899 | Electronic: 1537-6613

Cuevas, Luis E and Petrucci, Roberta and Swaminathan, Soumya (2012) Tuberculosis diagnostics for children in high-burden countries: what is available and what is needed. Paediatrics and International Child Health, 32 (sup2). pp. 30-37. ISSN 2046-9047

Thomas, Beena and Mimiaga, Matthew J. and Mayer, Kenneth H. and Perry, Nicholas S. and Swaminathan, Soumya and Safren, Steven A. (2012) The influence of stigma on HIV risk behavior among men who have sex with men in Chennai, India. AIDS Care, 24 (11). pp. 1401-1406. ISSN 0954-0121

Padmapriyadarsini, C and Narendran, G and Swaminathan, Soumya (2011) Diagnosis & treatment of tuberculosis in HIV co-infected patients. Indian Journal of Medical Research, 134 (12). pp. 850-865. ISSN Print: 0971-5916 | Electronic: 0975-9174

Thomas, Beena E and Mimiaga, M J and Kumar, Senthil and Swaminathan, Soumya and Safren, S A and Mayer, K H (2011) HIV in Indian MSM: Reasons for a concentrated epidemic & strategies for prevention. Indian Journal of Medical Research, 134 (12). pp. 920-929. ISSN Print: 0971-5916 | Electronic: 0975-9174

shah, I and Swaminathan, Soumya and Ramachandran, Geetha and Hemanth Kumar, A K and Goray, A and Chadoha, U and Tayal, S and Lala, M (2011) Serum Nevirapine and Efavirenz Concentrations and Effect of Concomitant Rifampicin in HIV Infected Children on Antiretroviral Therapy. Indian Pediatrics, 48 (12). pp. 943-947. ISSN Print: 0019-6061 | Electronic: 0974-7559

Swaminathan, Soumya and Padmapriyadarshini, C and Venkatesan, P and Narendran, G and Ramesh Kumar, S and Illiyas, Sheik and Menon, Pradeep A and Selvaraju, Sriram and Poornagangadevi, P and Bhavani, P K and Ponnuraja, C and Dhilip, Meenalochani and Ramachandran, Ranjani (2011) Efficacy and Safety of Once-Daily Nevirapine- or Efavirenz-Based Antiretroviral Therapy in HIVAssociated Tuberculosis: A Randomized Clinical Trial. Clinical Infectious Diseases, 53 (7). pp. 716-724. ISSN Print: 1058-4838 | Electronic: 1537-6591

Poorana Ganga Devi, N and Chandrasekaran, K and Bhavani, P K and Thiruvalluvan, C and Swaminathan, Soumya (2011) Persistence of Stunting After Highly Active Antiretroviral Therapy in HIV-Infected Children in South India. Indian Pediatrics, 48 (4). pp. 435-442. ISSN Print: 0019-6061 | Electronic: 0974-7559

Ramachandran, Geetha and Hemanth Kumar, A K and Swaminathan, Soumya (2011) Pharmacokinetics of Anti-tuberculosis Drugs in Children. Indian Journal of Pediatrics, 78 (4). pp. 435-442. ISSN Print: 0019-5456 | Electronic: 0973-7693

Swaminathan, Soumya and Ramachandran, Geetha and Hemanth Kumar, A K and Mahalingam, Vasantha and Soundararajan, Lakshmi and Kannabiran, Bhavani P and Navaneethapandian, Poorna Ganga Devi and shah, I and Karunaianandham, R and Sikhamani, S (2011) Factors influencing plasma nevirapine levels: a study in HIV-infected children on generic antiretroviral treatment in India. Journal of Antimicrobial Chemotherapy, 66 (6). pp. 1354-1359. ISSN Print: 0305-7453 | Electronic: 1460-2091

Padmapriyadarsini, C and Ramesh Kumar, S and Terrin, N and Narendran, G and Menon, P A and Ramachandran, Geetha and Subramaniyam, Sudha and Venkatesan, P and Wanke, C and Swaminathan, Soumya (2011) Dyslipidemia among HIV-infected Patients with Tuberculosis Taking Once-daily Nonnucleoside Reverse-Transcriptase Inhibitor–Based Antiretroviral Therapy in India. Clinical Infectious Diseases, 52 (4). pp. 540-546. ISSN Print: 1058-4838 | Electronic: 1537-6591

Swaminathan, Soumya and Kabra, S K (2011) Childhood Tuberculosis Challenges and Way Forward. Indian Journal of Pediatrics, 78. pp. 319-320. ISSN Print: 0019-5456 | Electronic: 0973-7693

Venaktesh, K V and Swaminathan, Soumya and Andrews, R J and Mayer, K H (2011) Tuberculosis and HIV co-infection: screening and treatment strategies. Drugs, 71 (9). pp. 1133-1152. ISSN Print: 0012-6667 Electronic: 1179-1950

Hemanth Kumar, A K and Sudha, V and Swaminathan, Soumya and Ramachandran, Geetha (2010) Comparison of HPLC & spectrophotometric methods for estimation of antiretroviral drug content in pharmaceutical products. Indian Journal of Medical Research, 132 (4). pp. 390-394. ISSN Print: 0971-5916 | Electronic: 0975-9174

Ramachandran, Geetha and Hemanth Kumar, A K and Vasantha, M and shah, I and Swaminathan, Soumya (2010) Effects of Enteral Insulin on Hypoxic Changes in a Rat Model of Necrotizing Enterocolitis. Indian Pediatrics, 47 (10). pp. 890-891. ISSN Print: 0019-6061 | Electronic: 0974-7559

Uhier, L M and Kumarasamy, N and Mayer, K H and Saxena, A and Losina, E and Muniyandi, M and Stoler, A W and Lu, Z and Walensky, R P and Flanigan, T P and Bener, M A and Freedberg, K A and Swaminathan, Soumya and CEPAC, International Investigators (2010) Cost-Effectiveness of HIV Testing Referral Strategies among Tuberculosis Patients in India. PLOS One, 5 (9). e12747. ISSN Electronic: 1932-6203

Swaminathan, Soumya and Padmapriyadarshini, C and Narendran, G (2010) HIV-Associated Tuberculosis: Clinical Update. Clinical Infectious Diseases, 50. pp. 1377-1386. ISSN Print: 1058-4838 | Electronic: 1537-6591

Swaminathan, Soumya and Narendran, G and Venkatesan, P and Iliayas, Sheik and Santhanakrishnan, Rameshkumar and Menon, Pradeep A and Padmapriyadarsini, C and Ramachandran, Ranjani and Chinnaiyan, Ponnuraja and Suhadev, Mohanarani and Sakthivel, Raja and Narayanan, P R (2010) Efficacy of a 6-month versus 9-month Intermittent Treatment Regimen in HIV-infected Patients with Tuberculosis: A Randomized Clinical Trial. American Journal of Respiratory and Critical Care Medicine, 181 (7). pp. 743-751. ISSN Print: 1073-449X | Electronic: 1535-4970

Narayanan, Sujatha and Swaminathan, Soumya and Supply, Philip and Shanmugam, Sivakumar and Narendran, G and Hari, Lalitha and Ramachandran, Ranjani and Locht, C and Jawahar, M S and Narayanan, P R (2010) Impact of HIV Infection on the Recurrence of Tuberculosis in South India. Journal of Infectious Diseases, 201 (5). pp. 691-703. ISSN Print: 0022-1899 | Electronic: 1537-6613

Swaminathan, Soumya (2010) Evidence-based Treatment of Tuberculosis for Children: The Unfinished Agenda. Indian Pediatrics, 47 (1). pp. 39-40. ISSN Print: 0019-6061 | Electronic: 0974-7559

Kwara, Awewura and Ramachandran, Geetha and Swaminathan, Soumya (2010) Dose adjustment of the non-nucleoside reverse transcriptase inhibitors during concurrent rifampicin-containing tuberculosis therapy: one size does not fit all. Expert Opinion on Drug Metabolism & Toxicology, 6 (1). pp. 55-68. ISSN Print: 1742-5255 Electronic: 1744-7607

Rajesh, L and Ramesh, K and Hanna, L E and Narayanan, P R and Swaminathan, Soumya (2010) Emergence of drug resistant mutations after single dose nevirapine exposure in HIV-1 infected pregnant women in south India. Indian Journal of Medical Research, 132 (11). pp. 509-512. ISSN Print: 0971-5916 | Electronic: 0975-9174

Swaminathan, Soumya and Rekha, Banu (2010) Pediatric Tuberculosis: Global Overview and ChallengesSoumya. Clinical Infectious Diseases, 50 (S3). S184-S194. ISSN Print: 1058-4838 | Electronic: 1537-6591

Rajesh, L and Karunaianandham, R and Narayanan, P R and Swaminathan, Soumya (2009) Antiretroviral Drug-Resistant Mutations at Baseline and at Time of Failure of Antiretroviral Therapy in HIV Type 1-Coinfected TB Patients. AIDS Research and Human Retroviruses, 25 (11). pp. 1179-1185. ISSN Print: 0889-2229; Online: 1931-8405

Ramachandran, Geetha and Ramesh, K and Hemanth Kumar, A K and Jagan, I and Vasantha, M and Padmapriyadarshini, C and Narendran, G and Rajasekaran, S and Swaminathan, Soumya (2009) Association of high T-allele frequency of CYP2B6 G516T polymorphism among ethnic south Indian HIV-infected patients with elevated plasma efavirenz and nevirapine. Journal of Antimicrobial Chemotherapy, 63 (4). pp. 841-843. ISSN : 0305-7453; eISSN: 1460-2091 (Unpublished)

Ramachandran, Geetha and Hemanth Kumar, A K and Rajasekaran, S and Kumar, P and Ramesh, K and Anitha, S and Narendran, G and Menon, Pradeep and Gomathi, C and Swaminathan, Soumya (2009) CYP2B6 G516T polymorphism but not rifampin coadministration influences steady-state pharmacokinetics of efavirenz in human immunodeficiency virus-infected patients in south India. Antimicrobial Agents and Chemotherapy, 53 (3). pp. 863-868. ISSN : 0066-4804; eISSN: 1098-6596

Safren, S A and Thomas, B E and Mimiaga, M J and Chandrasekaran, V and Menon, S and Swaminathan, Soumya and Mayer, K H (2009) Depressive symptoms and human immunodeficiency virus risk behavior among men who have sex with men in Chennai, India. Pathology, Health & Medicine, 14 (6). pp. 705-715. ISSN Print: 1354-8506, Online: 1465-3966

Suhadev, Mohanarani and Nyamathi, A M and Swaminathan, Soumya and Suresh, A\ and Venkatesan, P (2009) Factors Associated with Willingness to Participate in HIV Vaccine Trials among High-Risk Populations in South India. AIDS Research and Human Retroviruses, 25 (2). pp. 217-224. ISSN : 0889-2229; eISSN: 1931-8405

Thomas, B E and Chandra, S and Selvi, K J A and Suriyanarayanan, D and Swaminathan, Soumya (2009) Gender differences in sexual behaviour among people living with HIV in Chennai, India. Indian Journal of Medical Research, 129 (6). pp. 690-694. ISSN Print: 0971-5916; Online: 0975-9174

Ramesh Kumar, S and Swaminathan, Soumya and Flanigan, T and Mayer, K H and Niaura, R (2009) HIV & smoking in India. Indian Journal of Medical Research, 130 (July). pp. 15-22. ISSN Print: 0971-5916; Online: 0975-9174

Thomas, B and Mimiaga, M J and Mayer, K H and Johnson, C V and Menon, S and Chandrasekaran, V and Murugesan, P and Swaminathan, Soumya and Safren, S A (2009) HIV Prevention Interventions in Chennai, India: Are Men Who Have Sex with Men Being Reached? AIDS Patient Care and STDs, 23 (11). pp. 981-986. ISSN Print: 1087-2914, Online: 1557-7449

Kashi, V P and Jacob, R A and Paul, S and Nayak, Kaustuv and Satish, B and Swaminathan, Soumya and Satish, K S and Ranga, U (2009) HIV-1 Tat-specific IgG antibodies in high-responders target a B-cell epitope in the cysteine-rich domain and block extracellular Tat efficiently. Vaccine, 27 (48). pp. 6739-6747. ISSN 0264-410X

Thomas, B and Nyamathi, A and Swaminathan, Soumya (2009) Impact of HIV/AIDS on Mothers in Southern India: A Qualitative Study. AIDS and Behavior, 13 (5). pp. 989-996. ISSN Print: 1090-7165: Online: 1573-3254

Ramana Rao, P V and Murthy, Madhan Kumar and Basirudeen, S and Sharma, P and Swaminathan, Soumya and Raja, Alamelu (2009) Improved diagnosis of tuberculosis in HIV-positive patients using RD1-encoded antigen CFP-10. International Journal of Infectious Diseases, 13 (5). pp. 613-622. ISSN Print: 1201-9712; Online: 1878-3511

Hemanth Kumar, A K and Ramachandran, Geetha and Rajasekaran, S and Padmapriyadarshini, C and Narendran, G and Anitha, S and Subramanyam, Sudha and Kumaraswami, V and Swaminathan, Soumya (2009) Pharmacokinetics of lamivudine & stavudine in generic fixed-dose combinations in HIV-1 infected adults in India. Indian Journal of Medical Research, 130 (4). pp. 451-457. ISSN Print: 0971-5916; Online: 0975-9174

Poorna Ganga Devi, N and Shenbagavalli, R and Ramesh, K and Nataraja Rathinam, S and Swaminathan, Soumya (2009) Rapid Progression of HIV Infection in Infancy. Indian Pediatrics, 46 (1). pp. 53-56. ISSN : 0019-6061; EISSN: 0974-7559

Kabeen, B S A and Sikhamani, R and Swaminathan, Soumya and Perumal, Venkatesan and Paramasivan, Paulkumaran and Raja, Alamelu (2009) Role of Interferon Gamma Release Assay in Active TB Diagnosis among HIV Infected Individuals. PLoS ONE, 4 (5). pp. 1-7. ISSN 1932-6203

Gupta, R N and Wyatt, G E and Swaminathan, Soumya and Rewari, B B and Locke, T F and Ranganath, Vijayalakshmi and Sumner, L A and Liu, H (2008) Correlates of Relationship, Psychological, and Sexual Behavioral Factors for HIV Risk Among Indian Women. Cultural Diversity and Ethnic Minority Psychology, 14 (3). pp. 256-265. ISSN : 1099-9809; eISSN: 1939-0106

Talaat, KR and Kumaraswamy, N and Swaminathan, Soumya and Gopinath, R and Nutman, T B (2008) Filarial/Human Immunodeficiency Virus Coinfection in Urban Southern India. America Journal of Tropical Medicine and Hygiene, 79 (4). pp. 558-560. ISSN Print: 0002-9637; Online: 1476-1645

Swaminathan, Soumya and Narendran, G (2008) HIV and tuberculosis in India. Journal of Biosciences, 33 (4). pp. 527-537. ISSN Print:0250-5991; Online: 0973-7138

Swaminathan, Soumya and Hanna, L E and Sundaramurthi, J C and Leonard, A and Angayarkanni, B and Francis, A C and Lakshmi, S and Nayak, Kaustuv (2008) Prevalence and Pattern of Cross-Reacting Antibodies to HIV in Patients with Tuberculosis. AIDS Research and Human Retroviruses, 24 (7). pp. 941-946. ISSN Print: 0889-2229; Online: 1931-8405

Swaminathan, Soumya and Datta, Manjula and Radhamani, M P and Mathew, Sarah and Reetha, A M and Rajajee, Sarala and Mathew, Rema and Radhakrishna, S and Raghu, M B (2008) A Profile of Bacteriologically Confirmed Pulmonary Tuberculosis in Children. Indian Pediatrics, 45 (9). pp. 737-739. ISSN Print: 0019-6061; Online:0974-7559

Swaminathan, Soumya and Antony, L and Venkatesan, P and Hanna, L E and Angayarkanni, B and Ponnuraja, C and Robin, J and Precilla, K L and Ramachandran, Ranjani (2008) Sensitivity & specificity of combination testing algorithms for HIV in a tuberculosis clinic. Indian Journal of Medical Research, 128 (6). pp. 772-774. ISSN Print: 0971-5916; Online: 0975-9174

Soundararajan, L and Karunaianandham, R and Jauvin, V and Schrive, M H and Ramachandran, Ranjani and Narayanan, P R and Fleury, H J and Swaminathan, Soumya (2007) Characterization of HIV-1 Isolates from Antiretroviral Drug-Naive Children in Southern India. AIDS Research and Human Retroviruses, 23 (9). pp. 1119-1126. ISSN Print: 0889-2229; Online: 1931-8405

Hemanth Kumar, A K and Ramachandran, Geetha and Kumar, P and Anitha, S and Rajasekaran, S and Swaminathan, Soumya (2007) Effect of Anticoagulants on Plasma Nevirapine and Efavirenz Concentrations. Therapetic Drug Monitoring , 29 (5). pp. 652-654. ISSN 0163-4356

Swaminathan, Soumya and Narendran, G and Menon, Pradeep A and Padmapriyadarshini, C and Arunkumar, N and Sudharshanam, N M and Ramesh Kumar, S and Chandrasekhar, S (2007) Impact of HIV Infection on Radiographic Features in Patients with Pulmonary Tuberculosis. Indian Journal of Chest Diseases and Allied Sciences, 49 (3). pp. 133-136. ISSN 0377 9343

Swaminathan, Soumya and Padmapriyadarshini, C and Ramachandran, Ranjani and Menon, Pradeep A and Mohan, Nalini S and Kubendiran, G and Paramasivan, C N (2007) Localized Pulmonary Mycobacterium avium Disease in HIV-Infected Patients Without Access to HAART. Journal of the International Association of Physicians in (Providers of) AIDS Care, 6 (4). pp. 264-268. ISSN Print: 2325-9574 Online: 2325-9582

Alagarasu, K and Selvaraj, P and Swaminathan, Soumya and Raghavan, S and Narendran, G and Narayanan, P R (2007) Mannose binding lectin gene variants and susceptibility to tuberculosis in HIV-1 infected patients of South India. Tuberculosis, 87 (6). pp. 535-543. ISSN Print:1472-9792; Online: 1873-281X

Nyamathi, A M and Suhadev, Mohanarani and Swaminathan, Soumya and Fahey, J L (2007) Perceptions of a Community Sample about Participation in Future HIV Vaccine Trials in South India. AIDS and Behavior, 11 (4). pp. 619-627. ISSN Print: 1090-7165: Online: 1573-3254

Poorna Ganga Devi, N and Natajara Rathinam, S and Ramachandran, Ranjani and Swaminathan, Soumya (2007) Recurrent Herpes Zoster in Early Childhood. Indian Journal of Pediatrics, 74 (8). pp. 774-776. ISSN Print: 0019-5456; Online: 0973-7693

Ramachandran, Geetha and Hemanth Kumar, A K and Sukumar, B and Kumaraswami, V and Swaminathan, Soumya (2007) Single Dose Pharmacokinetics of Efavirenzin Healthy Indian Subjects. SAARC Journal of Tuberculosis, Lung Disease and HIV/AIDS , IV (1). pp. 38-43. ISSN Print: 818-9741; Online: 2091-0959

Banu Rekha, V V and Balasubramanian, Rani and Swaminathan, Soumya and Ramachandran, Rajeswari and Rahman, Fathima and Sundaram, V and Thyagarajan, K and Selvakumar, N and Adhilakshmi, A R and Iliayas, Sheik and Narayanan, P R (2007) Sputum conversion at the end of intensive phase of Category-1 regimen in the treatment of pulmonary tuberculosis patients with diabetes mellitus or HIV infection: An analysis of risk factors. Indian Journal of Medical Research, 126 (Nov). pp. 452-458. ISSN 0971-5916

Ramachandran, Geetha and Hemanth Kumar, A K and Rajasekaran, S and Padmapriyadarshini, C and Narendran, G and Anitha, S and Subramanyam, Sudha and Kumaraswami, V and Swaminathan, Soumya (2007) Steady-state pharmacokinetics of Nevirapine in HIV-1 infected adults in India. Journal of the International Association of Physicians in (Providers of) AIDS Care, 6 (4). pp. 251-254. ISSN Print: 2325-9574 Online: 2325-9582

Ramachandran, Geetha and Hemanth Kumar, A K and Sarala, K and Padmapriyadarshini, C and Anitha, S and Tharani, C B and Kumaraswami, V and Swaminathan, Soumya (2007) Urine levels of rifampicin & isoniazid in asymptomatic HIV-positive individuals. Indian Journal of Medical Research, 125 (Jun). pp. 763-766. ISSN 0971-5916

Swaminathan, Soumya and Luetkemeyer, A and Srikantiah, P and Lin, R and Charlebois, E and Havlir, D V (2006) Antiretroviral therapy and TB. Tropical Doctor, 36 (2). pp. 73-79. ISSN Print: 0049-4755 Online: 1758-1133

Selvaraj, P and Swaminathan, Soumya and Alagarasu, K and Raghavan, S and Narendran, G and Narayanan, P R (2006) Association of Human Leucocyte Antigen-A11 with resistance and B40 and DR2 with susceptibility to HIV-1 infection in South India. Journal of Acquired Immune Deficiency Syndromes, 43 (4). pp. 497-499. ISSN Print: 1525-4135; Online 1077-9450

Hemanth Kumar, A K and Ramachandran, Geetha and Kumar, P and Kumaraswami, V and Swaminathan, Soumya (2006) Can urine lamivudine be used to monitor antiretroviral treatment adherence? Journal of the International AIDS Society, 8 (4). pp. 53-62. ISSN eISSN 1758-2652

Narendran, G and Swaminathan, Soumya and Sathish, S and Rajasekaran, S (2006) Immune Reconstitution Syndrome in a Child With TB and HIV. Indian Journal of Pediatrics, 73 (7). pp. 627-629. ISSN Print: 0019-5456; Online: 0973-7693

Ramachandran, Geetha and Hemanth Kumar, A K and Rajasekaran, S and Padmapriyadarshini, C and Narendran, G and Sukumar, B and Sathishnarayan, S and Raja, K and Kumaraswami, V and Swaminathan, Soumya (2006) Increasing nevirapine dose can overcome reduced bioavailability due to rifampicin coadministration. Journal of Acquired Immune Deficiency Syndromes, 42 (1). pp. 36-41. ISSN Print: 1525-4135; Online 1077-9450

Ramachandran, Geetha and Hemanth Kumar, A K and Swaminathan, Soumya and Venkatesan, P and Kumaraswami, V and Greenblatt, D J (2006) Simple and rapid liquid chromatography method for determination of efavirenz in plasma. Journal of Chromatography B, 835 (1-2). pp. 131-135. ISSN 1570-0232

Hemanth Kumar, A K and Ramachandran, Geetha and Saradha, Banu and Narendran, G and Swaminathan, Soumya (2006) Urine nevirapine as a predictor of antiretroviral adherence. Indian Journal of Medical Research, 123 (Apr). pp. 565-568. ISSN 0971-5916

Suhadev, Mohanarani and Nyamathi, A M and Swaminathan, Soumya and Venkatesan, P and Raja Sakthivel, M and Shenbagavalli, R and Suresh, Anitha and Fahey, J L (2006) A pilot study on willingness to participate in future preventive HIV vaccine trials. Indian Journal of Medical Research, 124 (Dec). pp. 631-640. ISSN 0971-5916

Ramachandran, Geetha and Hemanth Kumar, A K and Rajasekaran, S and Padmapriyadarshini, C and Swaminathan, Soumya and Venkatesan, P and Sekar, L and Gurumurthy, Prema and Paramesh, P (2005) Acetylator status influences bioavailability of isoniazid in patients with advanced HIV disease. SAARC Journal of Tuberculosis, Lung Diseases and HIV/AIDS, 2 (2). pp. 9-12. ISSN Print: 1818-9741; Online: 2091-0959

Swaminathan, Soumya and Raghavan, Aarti and Datta, Manjula and Paramasivan, C N and Saravanan, K C (2005) Computerized Tomography Detects Pulmonary Lesions in Children with Normal Radiographs Diagnosed to have Tuberculosis. Indian Pediatrics, 42 (3). pp. 258-261. ISSN Print: 0019-6061; Online:0974-7559

Ramachandran, Geetha and Hemanth Kumar, A K and Gurumurthy, Prema and Rajasekaran, S and Padmapriyadarshini, C and Bhagavathy, S and Venkatesan, P and Sekar, L and Swaminathan, Soumya (2005) Effect of HIV on pharmacokinetics of antituberculosis drugs. Contagion, 2 (2). pp. 182-183. ISSN 1553-538X

Suhadev, M and Swaminathan, Soumya and Rajasekaran, S and Thomas, Beena E and Arunkumar, N and Muniyandi, M and Meenoladhani, D (2005) Feasibility of community DOT providers for tuberculosis treatment in HIV infected individuals - A pilot study. Indian Journal of Tuberculosis, 52 (4). pp. 179-183. ISSN 0019-5705

Thomas, Beena E and Arockiaselvi, Josephine and Suryanarayanan, D and Rehman, Fathima and Padmapriyadarshini, C and Swaminathan, Soumya (2005) Gender differences in perceived health related quality of life among persons living with HIV. SAARC Journal of Tuberculosis, Lung Diseases and HIV/AIDS, 2 (1). pp. 15-22. ISSN Print: 1818-9741; Online: 2091-0959

Swaminathan, Soumya and Padmapriyadarshini, C and Narendran, G and Thomas, Beena E and Anand, S and Rajyalakshmi, A (2005) Immune Reconstitution Syndrome Following Initiation of Antiretroviral Therapy in a Patient with HIV Infection and Multidrug-resistant Tuberculosis. Indian Journal of Chest Diseases and Allied Sciences, 47 (4). pp. 299-304. ISSN 0377 9343

Prabha, C and Karthic, S and Das, Sulochana D and Swaminathan, Soumya and Subramanyam, Sudha and Sukumar, B (2005) Impact of Tuberculosis on Serum Leptin Levels in Patients with HIV Infection. Hormone Research, 63 (5). pp. 228-233. ISSN Print: 0301-0163; Online: 1423-0046

Hanna, L E and Bose, J C and Nayak, Kaustuv and Subramanyam, Sudha and Swaminathan, Soumya (2005) Influence of Active Tuberculosis on Chemokine and Chemokine Receptor Expression in HIV-Infected Persons. AIDS Research and Human Retroviruses, 21 (12). pp. 997-1002. ISSN Print: 0889-2229; Online: 1931-8405

Thomas, Beena E and Suryanarayanan, D and Muniyandi, M and Dilip, Meenalochini and Rajasekaran, S and Swaminathan, Soumya (2005) Is awareness of HIV enough to alter high-risk behaviour? What do HIV positive individuals have to say? A study from south India. SAARC Journal of Tuberculosis, Lung Diseases and HIV/AIDS, 2 (1). pp. 1-9. ISSN Print: 1818-9741; Online: 2091-0959

Padmapriyadarshini, C and Swaminathan, Soumya (2005) Preventive therapy for tuberculosis in HIV infected individuals. Indian Journal of Medical Research, 121 (Apr). pp. 415-423. ISSN 0971-5916

Immanuel, Chandra and Victor, Lalitha and Silambu Chelvi, K and Padmapriyadarshini, C and Rehman, Fathima and Illiyas, Sheik and Swaminathan, Soumya (2005) Serum neopterin levels in HIV infected patients with & without tuberculosis. Indian Journal of Medical Research, 121 (Apr). pp. 220-225. ISSN 0971-5916

Dilip, Meenalochini and Thomas, Beena E and Rehman, Fathima and Sundaram, V and Suhadev, Mohanarani and Swaminathan, Soumya (2005) Status of AIDS Orphans in Chennai, South India. SAARC Journal of Tuberculosis, Lung Diseases and HIV/AIDS, 2 (2). pp. 28-33. ISSN Print: 1818-9741; Online: 2091-0959

Ramachandran, Geetha and Perloff, E S and von Moltke, L L and Swaminathan, Soumya and Wanke, C A and Grerenblatt, D J (2004) Analysis of generic antiretroviral formulations manufactured in India. AIDS, 18 (10). pp. 1482-1484. ISSN Print: 0269-9370; Online: 1473-5571

Gurumurthy, Prema and Ramachandran, Geetha and Hemanth Kumar, A K and Rajasekaran, S and Padmapriyadarshini, C and Swaminathan, Soumya and Bhagavathy, S and Venkatesan, P and Sekar, L and Mahilmaran, A and Ravichandran, N and Paramesh, P (2004) Decreased Bioavailability of Rifampin and Other Antituberculosis Drugs in Patients with Advanced Human Immunodeficiency Virus Disease. Antimicrobial Agents and Chemotherapy, 48 (11). pp. 4473-4475. ISSN Print: 0066-4804; Online: 1098-6596

Gurumurthy, Prema and Ramachandran, Geetha and Hemanth Kumar, A K and Rajasekaran, S and Padmapriyadarshini, C and Swaminathan, Soumya and Venkatesan, P and Sekar, L and Kumar, S and Krishnarajasekhar, O R and Paramesh, P (2004) Malabsorption of Rifampin and Isoniazid in HIV-Infected Patients With and Without Tuberculosis. Clinical Infectious Diseases, 38 (2). pp. 280-283. ISSN Print: 1058-4838; Online: 1537-6591

Swaminathan, Soumya and Rajasekaran, S and Shibichakravarthy, K and Amarendran, V A and Raja, K and Hari, Lalitha and Narayanan, Sujatha (2004) Multiple recurrences of tuberculosis in an HIV infected individual. Journal of the Associations of Physicians of India, 52 (Jun). pp. 513-514. ISSN 0004-5772

Swaminathan, Soumya (2004) Protective Efficacy of BCG. Indian Journal of Pediatrics, 71 (12). pp. 1083-1084. ISSN Print: 0019-5456; Online: 0973-7693

Thomas, Beena E and Rehman, Fathima and Malaisamy, Muniyandi and Dilip, Meenalochini and Suhadev, Mohanarani and Priyadarsini, Padma and Purushotham, Narendar K and Swaminathan, Soumya (2004) A Study of Condom Acceptability Among Men in an Urban Population in South India. AIDS and Behavior, 8 (2). pp. 215-220. ISSN Print: 1090-7165: Online: 1573-3254

Swaminathan, Soumya (2004) Tuberculosis in HIV-infected children. Pediatrics Respiratory Reviews , 5 (3). pp. 225-230. ISSN 1526-0542

Swaminathan, Soumya and Hanna, L E and Raja, Alamelu and Sankaran, K and Arunkumar, N (2003) Age-related changes in blood lymphocyte subsets of south Indian children. National Medical Journal of India, 16 (5). pp. 249-252. ISSN 0970-258X

Swaminathan, Soumya (2002) Basic concepts in the treatment of tuberculosis. Indian Journal of Pediatrics, 69. pp. 44-49. ISSN Print: 0019-5456; Online: 0973-7693

Swaminathan, Soumya (2002) Clinical presentation and treatment of HIV-TB. Indian Journal of Tuberculosis, 49 (1). pp. 11-16. ISSN 0019-5705

Ramalingam, B and Uma Devi, K R and Swaminathan, Soumya and Raja, Alamelu (2002) Isotype specific antibody response in childhood tuberculosis against purified 38kDa antigen of Mycobacterium tuberculosis. Journal of Tropical Pediatrics , 48 (3). pp. 188-189. ISSN Print: 0142-6338; Online: 1465-3664

Ramachandran, Ranjani and Swaminathan, Soumya and Somasundaram, Sulochana and Asgar, V N and Paramesh, P and Paramasivan, C N (2002) Mycobacteremia in tuberculosis patients with HIV infection. Indian Journal of Tuberculosis, 50 (1). pp. 29-32. ISSN 0019-5705

Sibi Chakravarthy, K and Singh, Raj B and Swaminathan, Soumya and Venkatesan, P (2002) Prevalence of asthma in urban and rural children in Tamil Nadu. National Medical Journal of India, 15 (5). pp. 260-263. ISSN 0970-258X

Swaminathan, Soumya and Sangeetha, M and Arunkumar, N and Menon, P A and Thomas, Beena and Shibi, K and Ponnuraja, -- and Rajasekar, S (2002) Pulmonary tuberculosis in HIV individuals: Preliminary report on clinical features and response to treatment. Indian Journal of Tuberculosis, 49 (4). pp. 189-193. ISSN 0019-5705

Padmapriyadarsini, C and Bhavani, P K and Sekar, L and Selvaraj, M and Poornagangadevi, N and Mothi, S N and Nandagopal, K and Vennila, S and Priyadarshini, G K and Manisha, Mahesh and Sanjeeva, G and Agarwal, Upasna and Suresh, E and Rewari, B B and Swaminathan, Soumya Effectiveness of symptom screening and incidence of tuberculosis among adults and children living with HIV infection in India. The National medical journal of India, 29 (6). pp. 321-325. ISSN 0970-258X

Book Section

Swaminathan, Soumya (2005) Preventive Therapy for Tuberculosis in HIV Infected Individuals. In: Proceedings of the Fifteenth Round Table Conference. Round Table Conference Series - HIV and Tuberculosis: Co-infection (15). [error in script], Gurgaon, Haryana, India, pp. 103-115.